bfgr.plantbiology.msu.edu
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http://bfgr.plantbiology.msu.edu/
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https://bfgr.plantbiology.msu.edu
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BFGR Genome Browsers
http://bfgr.plantbiology.msu.edu/browser_list.shtml
All of the sequences that have been annotated within the BFGR have been aligned to the pseudomolecules of five fully sequenced plant genomes and to the protein sequences of the gene models from those genomes. Those results can be viewed graphically within the respective genome browsers. Funding provided by DOE grant DE-FG02-08ER64631 and USDA grant CSREES 2008-04232. Web template provided by Designs By Darren. Photos courtesy of Shawn Kaeppler, Kevin Childs, Hugo.arg. And the USDA Photo Gallery.
Arabidopsis Genome Browser at Biofuel Feedstock Genomics Resource: Chr1:1..20000
http://bfgr.plantbiology.msu.edu/cgi-bin/gbrowse/bfgr_arab
Recenter on this region. Dump selection as FASTA. Back to the BFGR Homepage]. Showing 20 kbp from Chr1, positions 1 to 20,000. Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. Click one of the rulers to center on a location, or click and drag to select a region. Use the Scroll/Zoom buttons to change magnification and position. Upload your own data]. Download Decorated FASTA File. Arabidopsis Genome Browser at Biofuel Feedstock Genomics Resource.
BFGR Future Plans
http://bfgr.plantbiology.msu.edu/future_plans.shtml
Future releases of the Biofuel Feedstock Genomics Resource (BFGR) will contain new analyses and additional tools for researchers. Rice has a large quantity of publicly available expression data. Those data will be used to infer gene associations and gene networks in rice. Sequences from individual species within BFGR will be overlayed on the rice gene networks to allow researchers to hypothesize about gene networks in other species. Using meta-data that is associated with EST sequences from dbEST.
Sequence Summary Page
http://bfgr.plantbiology.msu.edu/cgi-bin/sequence_summary.cgi
Biofuel Feedstock Genomics Resource Sequence Summary. Sort by clicking the column headers. The Arabidopsis Information Resource. The Brachypodium distachyon Information Resource. International Barley Sequencing Consortium. Leymus cinereus x Leymus triticoides. Great Basin wild rye x Creeping wild rye. Medicago truculata Genome Project. Rice Genome Annotation Project. Switchgrass Genome Project at JGI. Picea engelmannii x Picea glauca. Picea engelmannii x Picea glauca. Populus tremula x Populus alba.
What's New at BFGR
http://bfgr.plantbiology.msu.edu/new.shtml
Release 3 of the Biofuel Feedstock Genomics Resource is available. The official gene models for Brachypodium distachyon. Initial release) from Phytozome. Release 4a.53 from MaizeSequence.org. Have been added to the BFGR database. For Release 3 we have used the Populus trichocarpa. Version 2 gene models from Phytozome. And the Arabidopsis thaliana. Release 9 gene models from TAIR. Picea engelmannii x Picea glauca. Populus tremula x Populus alba. Populus trichocarpa x Populus deltoides. The BLAST alignment...
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The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species
http://database.oxfordjournals.org/content/2012/bar061.abstract
View Current Issue (Volume 2016 Issue 2016). The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species. Kevin L. Childs. Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA. Tel: 517 333 5969. Fax: 517 353 1926. Email: kchilds{at}plantbiology.msu.edu. August 14, 2011. October 3, 2011. December 5, 2011. Http:/ bfgr.plantbiology.msu.edu. The Author(s) 2012. Published by Oxford University Press.
Links
http://oryzasnp.plantbiology.msu.edu/links.html
Links Associated with OryzaSNP. OryzaSNP Project at IRRI. OryzaSNP Genome Browser at IRRI. MSU Rice Genome Annotation Project (formerly at TIGR). Rice Annotation Project (RAP) Database. Rice research at the Buell lab at MSU. MSU Biofuel Feedstock Genomics Resource. Weigel Group at Max Planck Institute. International Rice Research Institute. Original template by Darjan Panic and Brian Green. Photo courtesy Ariel Javellana/IRRI.
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bfgra
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bfgraleigh | Living on $1 a day for a month in aid of Raleigh International
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