mmbios.org

psc.edu

Anton

http://www.psc.edu/index.php/resources-for-users/computing-resources/anton

Data Handling and Analytics. Anton is a special purpose supercomputer for biomolecular simulation designed and constructed by D. E. Shaw Research. DESRES). A 512-node Anton machine has been made available without cost by DESRES for non-commercial research use by US universities and other not-for-profit institutions, and is hosted by PSC with support from the NIH National Institute of General Medical Sciences. Research conducted on Anton. Roll Out the Beta Barrels. Projects in Scientific Computing. Struct...

psc.edu

Software

http://www.psc.edu/index.php/resources-for-users/software

Data Handling and Analytics. Software available on PSC systems. The environment management package Module is essential for running software on PSC systems. Be sure to check if there is a module for the software you want to use by typing. Command lists any additional modules that must also be loaded. Note that in some cases the order in which these additional modules are loaded matters. Documentation on the module command. See software by category -. See software by resource -. Mapping single molecule seq...

psc.edu

Staff Directory

http://www.psc.edu/index.php/home/staff-directory

Data Handling and Analytics. User Services Hotline (Pgh). This email address is being protected from spambots. You need JavaScript enabled to view it. This email address is being protected from spambots. You need JavaScript enabled to view it. This email address is being protected from spambots. You need JavaScript enabled to view it. This email address is being protected from spambots. You need JavaScript enabled to view it. Assistant to Executive Director. Senior Information Security Analyst. This emai...

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Outreach and Training

http://www.psc.edu/index.php/resources-for-users/training

Data Handling and Analytics. We offer a variety of workshops on subjects ranging from code optimization and parallel programming to specific scientific topics. In addition to workshops, we also host symposia on high performance computing topics. For more information about our education, outreach and training programs, see Resources for Educators. Pages or send e-mail to This email address is being protected from spambots. You need JavaScript enabled to view it. March 31, 2016. May 17-18, 2016. This works...

psc.edu

Storage Resources

http://www.psc.edu/index.php/resources-for-users/storage-resources

Data Handling and Analytics. Data Supercell User Guide. Applying For A Storage Allocation. Managing Your Storage Allocation. Improving Your File Transfer Performance. Getting to Your Files if Your Data Supercell Access is Blocked. The Data Supercell is well-suited for data storage needs well beyond those met by traditional archivers. For more information about the advantages of the Data Supercell over conventional archival systems, please see the Data Supercell features page. Users will be notified the d...

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Collaborations

http://www.psc.edu/index.php/home/major-collaborations

Data Handling and Analytics. PSC staff are involved in collaborative research projects with scientists in many different fields. PSC staff lead the XSEDE efforts in the areas of Systems and Software Engineering, Networking, Allocations, Advanced User Support Services, Novel and Innovative Projects, and Outreach. For more information, see www.xsede.org. Acknowledgement(s): To reference XSEDE, use the follwoing citation. Computing in Science and Engineering. Include Pacific Northwest National Laboratory.

psc.edu

Computing Resources

http://www.psc.edu/index.php/resources-for-users/computing-resources

Data Handling and Analytics. This page lists PSC's supercomputing-class computational resources. For the data management options PSC provides, see the storage resources page. Is a uniquely capable resource for empowering new research communities and bringing together HPC and Big Data. Compute nodes with hardware-supported shared memory ranging from 128GB to 12TB per node to support genomics, machine learning, graph analytics and other fields where partitioning data is impractical. Is designed for memory-...

psc.edu

Greenfield

http://www.psc.edu/index.php/resources-for-users/computing-resources/greenfield

Data Handling and Analytics. File Storage and Transfer. Monitoring and killing jobs. Getting Started on Greenfield. Greenfield is an XSEDE. Resource and so you can use XSEDE methods of connecting to Greenfield and XSEDE methods of transferring files between your local machine, Greenfield and other PSC filesystems. Details on connecting are given below. Information on file transfers is in the File Transfer section. Of this User Guide. For information on using XSEDE see the XSEDE web site. Service units tr...

psc.edu

CompEx

http://www.psc.edu/index.php/resources-for-educators/pre-college-comp-science/compex

Data Handling and Analytics. Computation Exploration (CompEx) is a high performance computing teaching module designed to be Incorporated into existing curricula in high school computer science classrooms. This program teaches high school students the basics of parallel programming and guides them through the development of their own parallel programs. It showed me how real programming is done.". Getting my code to run in parallel was a joy, especially since I got to be the first.".

psc.edu

CMIST

http://www.psc.edu/index.php/resources-for-educators/pre-college-comp-science/cmist-best

Data Handling and Analytics. Computational Modules in Science Teaching (CMIST) brings innovative science tutorials into secondary school classrooms, focusing on integrative computational biology, physiology, and biophysics. CMIST modules include high quality, realistic 3-D animations produced with cutting-edge simulation and visualization software. Molecular Transport in Cells. An Introduction to Enzymes. The Effect of Temperature on Enzyme Catalysis. The Effect of pH on Enzyme Catalysis. Pittsburgh Supe...