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Filamentous Fungal Gene Expression Database

Filamentous Fungal Gene Expression Database

http://bioinfo.townsend.yale.edu/

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Filamentous Fungal Gene Expression Database | bioinfo.townsend.yale.edu Reviews
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Filamentous Fungal Gene Expression Database
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1 Filamentous Fungal Gene Expression Database
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welcome,feedback,log on/register,my database,public data,normalize,links,publications,new and noteworthy,ftp instruction,first,ffged publication,updates for annotation,and neurospora crassa,kegg pathway,annotation for neurospora,multiple files upload
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Filamentous Fungal Gene Expression Database | bioinfo.townsend.yale.edu Reviews

https://bioinfo.townsend.yale.edu

Filamentous Fungal Gene Expression Database

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1

Frequently Asked Questions

http://bioinfo.townsend.yale.edu/faq.jsp

Filamentous Fungal Gene Expression Database. Answers to some of the most frequently asked questions submitted to FFGED are listed as follows. How do I submit an experiment to the database? How do I cite FFGED? How do I acquire a FFGED account? Do I need to register a FFGED account if I only want to do normalization? How do I update my account information or change password? I've forgotten my FFGED username and password? I can't log into FFGED? How do I get started? What are public experiments? As a conse...

2

Page Not Found

http://bioinfo.townsend.yale.edu/False

Filamentous Fungal Gene Expression Database. Was not found on our server. Please try the following:. Make sure that the Web site address displayed in the address bar of your browser is spelled and formatted correctly. If you reached this page by clicking a link, please contact us to report the broken link. Grant funding: NIH NIGMS GM068087. Database administration: The Townsend Lab. Last updated: Nov 24, 2010, 0:48 PM (EST).

3

Log On

http://bioinfo.townsend.yale.edu/feedback.jsp

Filamentous Fungal Gene Expression Database. Log on and Registration. Existing users - Log on. New users - Register now! Create your own database. Grant funding: NIH NIGMS GM068087. Database administration: The Townsend Lab. Last updated: Jun 01, 2011, 11:50 AM (EDT).

4

Links

http://bioinfo.townsend.yale.edu/links.jsp

Filamentous Fungal Gene Expression Database. Some useful links are listed here. There are 10 est libraries at the site, however, you can combine libraries below as they are originated from same libraries made by Nelson et al., 1997, FGB, 21 348-363. "Sconidial" library, for example, is a subtracted conidial library. ESTs in both "sexual" and "perithecial" were derived from the Nelson's perithecial library but in the different labs, so have different names. Neurospora crassa 3 est2loci.

5

Normalize

http://bioinfo.townsend.yale.edu/online.jsp

Filamentous Fungal Gene Expression Database. Step 1: Please upload GenePix Results (GPR) file. GPR File ( .gpr. This service is only for normalization and all related data will be erased after your session expires. To store gene expression data in our database, please register here. To create your own database. Grant funding: NIH NIGMS GM068087. Database administration: The Townsend Lab. Last updated: Feb 18, 2011, 5:40 PM (EST).

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Lab News - The Zhang Lab

http://cbb.big.ac.cn/Lab_News

From The Zhang Lab. International workshop on statistical machine learning and biosciences on July 18-19, 2013. Dr Zhang Zhang joined the Editorial Board of PLoS ONE. As Academic Editor [2012-09-22]. Welcome Hao Wu, Gang Wu, Dawei Huang and Siqi Liu to join the Lab [2012-08-14]. Three posters presented in the 5th Chinese Conference on Bioinformatics and Systems Biology, Harbin, China [2012-08-08]. Summer internships available for undergraduates/graduate students. At CAS official website [2012-03-31].

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Web Systems - The Zhang Lab

http://cbb.big.ac.cn/Web_Systems

From The Zhang Lab. MethBank: DNA Methylome Programming Database. ESND (English-to-Chinese Scientific Nomenclature Dictionary). IBio (= my biology my biography). FFGED (Filamentous Fungal Gene Expression Database). TreeFam (Tree Families Database). Web Services and Servers. Cloud CAT (Cloud-based Composition Analysis Toolkit). FGF (Fishing Gene Family). Description: Information Commons for Rice. Availability: http:/ ic4r.org. Description: a catalogue of biological databases. Description: A database for m...

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Publications - The Zhang Lab

http://cbb.big.ac.cn/Publications

From The Zhang Lab. PUBLICATIONS (*Corresponding author;. Yin, H.Y, Wang, G.Y., Ma, L.N., Yi, S.V., Zhang, Z.*. What signatures dominantly associate with gene age? Xu, XJ., Ji, Z.H, Zhang, Z.*. CloudPhylo: a fast and scalable tool for phylogeny reconstruction, submitted. Zhao, Z.M., Campbell, M.C., Li, N., Zhang, Z. Townsend, J.P. Detection of regional variation in selection intensity within protein-coding genes using DNA sequence polymorphism and divergence data, submitted. Ma, LN., Li, A., Zou,...2015)...

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Open Positions - The Zhang Lab

http://cbb.big.ac.cn/Open_Positions

From The Zhang Lab. Are you a problem solver? Are you a difference maker to achieve your values? Are you ready to dig out the treasure from "ATGCAATGGC."? Welcome to join us! Summer internships for undergraduates/graduate students. The above content is courtesy of Dr. Si-Min He. At Institute of Computing Technology, Chinese Academy of Sciences). Students from developing countries may apply the CAS-TWAS Fellowship. Apply for Fellowship for International Scholar. Intern research positions are available for...

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Pages that link to "Main Page" - The Zhang Lab

http://cbb.big.ac.cn/Special:WhatLinksHere/Main_Page

Pages that link to "Main Page". The Zhang Lab talk. No pages link to Main Page. Retrieved from " http:/ cbb.big.ac.cn/Special:WhatLinksHere/Main Page. About The Zhang Lab.

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Changes related to "Main Page" - The Zhang Lab

http://cbb.big.ac.cn/Special:RecentChangesLinked/Main_Page

Changes related to "Main Page". This is a list of changes made recently to pages linked from a specified page (or to members of a specified category). Pages on your watchlist. Changes in last 1. Show new changes starting from 15:31, 21 August 2016. The Zhang Lab talk. Show changes to pages linked to the given page instead. No changes on linked pages during the given period. Retrieved from " http:/ cbb.big.ac.cn/Special:RecentChangesLinked/Main Page. About The Zhang Lab.

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Lab Meetings - The Zhang Lab

http://cbb.big.ac.cn/Lab_Meetings

From The Zhang Lab. Time: 10:00am-12:00pm on Thursday. Location: conference room 203. 1 persons for work report, 1 person for journal club. The person in charge of journal club is responsible for booking conference room, and possibly, projector. All materials including ppt and paper should be uploaded to the folder named "Lab Meeting" in our lab dropbox. Volunteer for presenting work or discussing paper is always welcomed. Expression and Re-annotation Group. This page has been accessed 11,182 times.

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Assets - The Zhang Lab

http://cbb.big.ac.cn/Assets

From The Zhang Lab. Lab Calendar in Google. Code of Conduct for Scientific Practice. Elements of a successful graduate career. Lab Calendar in Google. Structured Sections (Introduction, Methods, Results, Discussion). Text: Times New Roman, 12pt. Figure: Arial Narrow =12pt, EPS format. CBB Cover Letter Template with Electronic Letterhead. Poster with regular size (height 118.9cm, width 84.1cm). BMC期刊 Dr. Jo Appleford 讲如何投稿. 请使用本组的论文模板 CBB Manuscript Template. 字体 Times New Roman, 12pt. Before submitting th...

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People - The Zhang Lab

http://cbb.big.ac.cn/People

From The Zhang Lab. Group Photo, Oct 2015, ICG 2015 Xi'an. From left: Yuan Fangfang, Yu Chunlei, Wang Guangyu, Yin Hongyan, Sun Shixiang, Sang Jian, Zhang Zhang, Xia Lin, Li Mengwei, Hao Lili, Ma Lina, Xu Xingjian, Zou Dong. PhD, Institute of Computing Technology, Chinese Academy of Sciences. Dr Donghui Li, TAIR, Stanford University. Dr Xiaodong Wang, WormBase, California Institute of Technology. Lina Ma - 马利娜. PhD, Beijing Institute of Genomics, Chinese Academy of Sciences. Lili Hao - 郝丽丽. Dong Zou - 邹东.

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Filamentous Fungal Gene Expression Database

Filamentous Fungal Gene Expression Database. Chip-seq or RNA-seq raw data should be submitted by FTP client. Upload files, please read [FTP Upload Documentation]. Download files, please read [Raw Data Download Documentation]. FFGED publication is available at pubmed. Updates for uploading results file. Automatic online annotation for raw data file, normalized file and results file has also been changed. KEGG pathway information for several species have been integrated into the database. Tab-delimited fil...

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