insilicosoft.com
About InsilicoSoft
https://www.insilicosoft.com/about.html
The company was formed in 2013 in part as a means of enabling the continuation of professional web application development work which the founders were involved in whilst working at the Computer Science. Department of Oxford University. In addition to the original development activities the site is also used as an online archive for previous research work and as a development ground for new ideas, new technologies, and the exploration of areas of interest. Functional Curation ( website.
comodl.com
Open Source Brain
http://www.comodl.com/docs
Welcome to Open Source Brain! We hope youll find the information you require here, but if not, please get in touch. Browse the projects currently available on OSB ¶. Here is a quick video showing some of the tools you can use for browsing the projects on OSB. Explore cells and networks in 3D ¶. Here you can find a video showing how you can use the OSB Explorer to visualise cells and network models in 3D. Browse one of the projects ¶. Granule Cell by Solinas et al. 2010. Directory), see here. This is the ...
physiome.jp
Links
http://www.physiome.jp/link/index.html
Http:/ www.physiome.org.nz. Http:/ www.physiome.org. Http:/ www.europhysiome.org. Http:/ www.biomedtown.org. IMAG (Interagency Modeling and Analysis Group) Wiki. Http:/ www.imagwiki.org/mediawiki/. GCOE "in silico medicine". Http:/ www.mei.osaka-u.ac.jp/gCOE/english/. Http:/ www.incf.org. Http:/ www.neuroinf.jp. Neuroinformatics Japan Center (NIJC). Https:/ nijc.brain.riken.jp. Https:/ dynamicbrain.neuroinf.jp. Http:/ www.garuda-alliance.org. The Systems Biology Institute. Http:/ www.cellml.org.
gjfelix.org
Gerardo J. Félix-Martínez | Make your own basic cell diagrams
http://gjfelix.org/blog/make-a-basic-cell-diagram
Gerardo J. Félix-Martínez. Mdash; Academic and personal site. Make your own basic cell diagrams. Example of a cell diagram. The Illustrator file is available for download below. Recently, we published a review about the field of mathematical modeling of the pancreatic β-cell (you can find it here. I decided to upload it because three or four years ago, when I had been looking for a tool to design nice diagrams for my works and presentations, I found an open source project called “ The CellML project.
models.cellml.org
Physiome Model Repository
http://models.cellml.org/sitemap
An overview of the available content on this site. Keep the pointer still over an item for a few seconds to get its description. Beeler, Reuter, 1977. Reconstruction of the action potential of ventricular myocardial fibres. Schmid, Nash, Young, Hunter, 2006. Myocardial Material Parameter Estimation - A Comparative Study for Simple Shear (Separated Fung Law). Myocardial Material Parameter Estimation - A Comparative Study for Simple Shear (Taylor Series Expansion of the Tangent Law). MRNA expression levels...
models.cellml.org
Myofilament Mechanics — Physiome Model Repository
http://models.cellml.org/myofilament_mechanics
Adrian, Peachey, 1973. Reconstruction of the action potential of frog sartorius muscle. Campbell, Chandra, 2006. Functions of Stretch Activation in Heart Muscle. Cheng, Brown, Loeb, 2000. Virtual muscle: a computational approach to understanding the effects of muscle properties on motor control. Hai, Murphy, 1988. Cross-bridge phosphorylation and regulation of latch state in smooth muscle. Hunter, McCulloch, ter Keurs, 1998. Modelling the mechanical properties of cardiac muscle. Nash, Panfilov, 2004.
models.cellml.org
Circadian Rhythms — Physiome Model Repository
http://models.cellml.org/circadian_rhythms
Conradie, Bruggeman, Ciliberto, Csikasz-Nagy, Novak, Westerhoff, Snoep,. Restriction point control of the mammalian cell cycle via the cyclin E/Cdk2:p27 complex. Gerard, Goldbeter, 2010. Temporal self-organization of the cyclin/Cdk network driving the mammalian cell cycle. A model for circadian oscillations in the Drosophila period protein (PER). A model for circadian oscillations in the Drosophila period protein (PER). Goldbeter, Pourquie, 2008. Goldbeter, Pourquie, 2008. Leloup, Goldbeter,. Modeling th...
models.cellml.org
Mechanical Constitutive Laws — Physiome Model Repository
http://models.cellml.org/mechanical_constitutive_laws
Simplified models for gas exchange in the human lungs. Simplified models for gas exchange in the human lungs. Costa, Holmes, McCulloch, 2001. Modelling Cardiac Mechanical Properties In Three Dimensions. Large deformation analysis of some soft biological tissues. Gasser, Ogden, Holzapfel, 2006. Fibre Dispersion Law (Version A). Gasser, Ogden, Holzapfel, 2006. Fibre Dispersion Law (Version B). Guccione, Mcculloch, Waldman, 1991. Teaching from classic papers: Hill's model of muscle contraction. Myocardial M...