dee.bakeridi.edu.au

The Digital Expression Explorer

The Digital Expression Explorer. The Digital Expression Explorer (DEE) is a repository of digital gene expression profiles mined from public RNA-seq data sets. These data are obtained from NCBI Short Read Archive. Due to the El-Osta lab relocation to Monash Central Clinical school at the end of 2016, this resource will likely disappear some time in 2017. We are working on a new version of DEE that will host more data and more features, which will appear in 2017. Select an organism of interest. Ziemann M,...

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The Digital Expression Explorer | dee.bakeridi.edu.au Reviews

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The Digital Expression Explorer. The Digital Expression Explorer (DEE) is a repository of digital gene expression profiles mined from public RNA-seq data sets. These data are obtained from NCBI Short Read Archive. Due to the El-Osta lab relocation to Monash Central Clinical school at the end of 2016, this resource will likely disappear some time in 2017. We are working on a new version of DEE that will host more data and more features, which will appear in 2017. Select an organism of interest. Ziemann M,...

<META> KEYWORDS

1 users please note

2 hosted rna seq data

3 species

4 datasets

5 updated

6 arabidopsis thaliana

7 caenorhabditis elegans

8 drosophila melanogaster

9 danio rerio

10 escherichia coli

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users please note,hosted rna seq data,species,datasets,updated,arabidopsis thaliana,caenorhabditis elegans,drosophila melanogaster,danio rerio,escherichia coli,homo sapiens,mus musculus,rattus norvegicus,saccharomyces cerevisiae,search accession numbers

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The Digital Expression Explorer | dee.bakeridi.edu.au Reviews

https://dee.bakeridi.edu.au

The Digital Expression Explorer. The Digital Expression Explorer (DEE) is a repository of digital gene expression profiles mined from public RNA-seq data sets. These data are obtained from NCBI Short Read Archive. Due to the El-Osta lab relocation to Monash Central Clinical school at the end of 2016, this resource will likely disappear some time in 2017. We are working on a new version of DEE that will host more data and more features, which will appear in 2017. Select an organism of interest. Ziemann M,...

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dee.bakeridi.edu.au

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The Digital Expression Explorer

http://dee.bakeridi.edu.au/index.html

The Digital Expression Explorer. The Digital Expression Explorer (DEE) is a repository of digital gene expression profiles mined from public RNA-seq data sets. These data are obtained from NCBI Short Read Archive. Due to the El-Osta lab relocation to Monash Central Clinical school at the end of 2016, this resource will likely disappear some time in 2017. We are working on a new version of DEE that will host more data and more features, which will appear in 2017. Select an organism of interest. Ziemann M,...

2

The Digital Expression Explorer

http://dee.bakeridi.edu.au/news.html

15th December 2016 - Our lab is moving to Monash Central Clinical School. Stay tuned for a revamped DEE in 2017 with new data and features. This URL could go dead anytime next year so please finalise your work. 13th August 2016 - Looking for Illumina bodymap2 count data? Try searching ERP000546 for human. 13th August 2016 - Bulk data dumps are back online. An issue with the count matrix headers was resolved. 8th Jan 2016 - Ever searched for datasets and got the error "Too many results found"? 8th Jan 201...

3

The Digital Expression Explorer

http://dee.bakeridi.edu.au/help.html

See below for resolving common issues and questions. Q) My datasets of interest aren't included in DEE. What should I do? A) Firstly confirm that the species/accession number combination is correct. Then check whether the sequence data is available from the SRA ftp site. If the dataset has been added 2 months ago, then contact us and we'll have it added to DEE within 1 month. Q) How do I open zip compressed files? A) Winzip can uncompress .zip files and is available here. Q) How do I load the data into R?

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The Digital Expression Explorer

http://dee.bakeridi.edu.au/about.html

About Digital Expression Explorer. The compendium is designed to bring biologists closer to large scale gene expression data sets. We have processed thousands of public RNA-seq data sets from a veriety of organisms with open-source bioinformatics tools and make them freely accessible. We would like to thank the folks at SRA. For hosting these raw data sets. The compendium is brought to you by the Epigenetics in Human Health and Disease Laboratory. And Computational Biology Unit. Download from NCBI SRA.

5

The Digital Expression Explorer

http://dee.bakeridi.edu.au/bulk.html

Bulk data@Digital Expression Explorer. Choose from the organisms below. The zip-compressed archive contains the count matrix, meta-data and analysis reports. Homo sapiens (3.2G). Mus musculus (3.1G).

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The Digital Expression Explorer

The Digital Expression Explorer. The Digital Expression Explorer (DEE) is a repository of digital gene expression profiles mined from public RNA-seq data sets. These data are obtained from NCBI Short Read Archive. Due to the El-Osta lab relocation to Monash Central Clinical school at the end of 2016, this resource will likely disappear some time in 2017. We are working on a new version of DEE that will host more data and more features, which will appear in 2017. Select an organism of interest. Ziemann M,...

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