empai.iab.keio.ac.jp

emPAI Calc ( Estimate in vivo Protein Amounts from Identification Data )

EmPAI Calc. (Click here to proceed). A short introduction (which appeared in Bioinformatics. Introduction to emPAI algorithm in proteomic data analysis with an emphasis on dynamic range and linearity. EmPAI (exponentially modified protein abundance index), developed by Ishihama et al. Max upload size: 15 megabytes (and counting). Maximum number of upload slots: 15. Data Format: Mascot (ver. 2.1) Peptide Summary Report. In HTML / Xome Peptide List / CSV. JavaScript must be enabled on all browsers.

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emPAI Calc ( Estimate in vivo Protein Amounts from Identification Data ) | empai.iab.keio.ac.jp Reviews

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EmPAI Calc. (Click here to proceed). A short introduction (which appeared in Bioinformatics. Introduction to emPAI algorithm in proteomic data analysis with an emphasis on dynamic range and linearity. EmPAI (exponentially modified protein abundance index), developed by Ishihama et al. Max upload size: 15 megabytes (and counting). Maximum number of upload slots: 15. Data Format: Mascot (ver. 2.1) Peptide Summary Report. In HTML / Xome Peptide List / CSV. JavaScript must be enabled on all browsers.

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7 tutorial

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emPAI Calc ( Estimate in vivo Protein Amounts from Identification Data ) | empai.iab.keio.ac.jp Reviews

https://empai.iab.keio.ac.jp

EmPAI Calc. (Click here to proceed). A short introduction (which appeared in Bioinformatics. Introduction to emPAI algorithm in proteomic data analysis with an emphasis on dynamic range and linearity. EmPAI (exponentially modified protein abundance index), developed by Ishihama et al. Max upload size: 15 megabytes (and counting). Maximum number of upload slots: 15. Data Format: Mascot (ver. 2.1) Peptide Summary Report. In HTML / Xome Peptide List / CSV. JavaScript must be enabled on all browsers.

INTERNAL PAGES

empai.iab.keio.ac.jp

1

Which data format do you use ? (emPAI Calc)

http://empai.iab.keio.ac.jp/which.php

Retention Time Prediction Tools. IAB, Keio Univ. Xome (MKI, Japan). Which data format do you use? For Mascot ( ver. 2.1. EmPAI Calc for Mascot. For Xome user =. EmPAI Calc for Xome. Others (SEQUEST etc.) =. EmPAI Calc for CSV. C) 2007 Institute for Advanced Biosciences, Keio University.

2

emPAI Calc for Xome ( Estimate in vivo Protein Amounts from Identification Data )

http://empai.iab.keio.ac.jp/internal

EXTERNAL (for Mascot HTML). Sample files can be downloaded from here. Search fields reference are here. EmPAI Calc for Xome. DEC Mycoplasma pneumoniae M129. Select Enzyme and Modification:. Set peptide MW range :. Set RT range :. Shinoda et al. (2006). Krokhin et al. (2004). Petritis et al. (2003). No Retention Time filtering. Select peptide type :. Filter by identity threshold. Filter by Peptide Score. Select your Mascot file:. C) 2007 Institute for Advanced Biosciences, Keio University.

3

emPAI Calc ( Estimate in vivo Protein Amounts from Identification Data )

http://empai.iab.keio.ac.jp/empai_form.php

Retention Time Prediction Tools. IAB, Keio Univ. Xome (MKI, Japan). Sample files can be downloaded from here. Search fields reference are here. EmPAI Calc for Mascot. Select Enzyme and Modification:. Set peptide MW range :. Set RT range (observable peptides):. Shinoda et al. (2006). Krokhin et al. (2004). Petritis et al. (2003). No Retention Time filtering. Select peptide type :. Filter by identity threshold. Filter by Peptide Score. Select your Mascot file:.

4

emPAI Calc QuickStart Tutorials

http://empai.iab.keio.ac.jp/quick.php

Institute for Advanced Biosciences. Max upload size: 15 megabytes (and counting). Maximum number of upload slots: 15. Data Format: Mascot (ver. 2.1) Peptide Summary Report. In HTML / Xome Peptide List / CSV. JavaScript must be enabled on all browsers. Fully supported browsers (recommended). Firefox 0.8 (download: Windows. Netscape 7.1 (download: Windows. Mozilla 1.4 (download: Windows. Safari 1.2.1 (download: Mac. Microsoft IE 5.5 (download: Windows.

5

emPAI Calc for CSV ( Estimate in vivo Protein Amounts from Identification Data )

http://empai.iab.keio.ac.jp/CSV

EXTERNAL (for Mascot HTML). A sample CSV file can be downloaded from here. Prepare your peptide lists in this format. EmPAI Calc for CSV File. Select Enzyme and Modification:. Set peptide MW range :. Set RT range :. Shinoda et al. (2006). Krokhin et al. (2004). Petritis et al. (2003). No Retention Time filtering. Select your Mascot file:. C) 2007 Institute for Advanced Biosciences, Keio University.

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emPAI Calc ( Estimate in vivo Protein Amounts from Identification Data )

EmPAI Calc. (Click here to proceed). A short introduction (which appeared in Bioinformatics. Introduction to emPAI algorithm in proteomic data analysis with an emphasis on dynamic range and linearity. EmPAI (exponentially modified protein abundance index), developed by Ishihama et al. Max upload size: 15 megabytes (and counting). Maximum number of upload slots: 15. Data Format: Mascot (ver. 2.1) Peptide Summary Report. In HTML / Xome Peptide List / CSV. JavaScript must be enabled on all browsers.

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