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UCSC Genome Browser Home

UCSC Genome Browser

http://genome-euro.ucsc.edu/

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UCSC Genome Browser Home | genome-euro.ucsc.edu Reviews
<META>
DESCRIPTION
UCSC Genome Browser
<META>
KEYWORDS
1 genome
2 genome browser
3 human genome
4 genome assembly
5 Blat
6 UCSC
7 bioinformatics
8 gene prediction
9 SNP
10 SNPs
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genome browser,genomes,mouse ncbi37/mm9,configure,track search,tools,blat,table browser,variant annotation integrator,data integrator,gene sorter,genome graphs,in silico pcr,liftover,visigene,other utilities,mirrors,third party mirrors,downloads,utilities
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UCSC Genome Browser Home | genome-euro.ucsc.edu Reviews

https://genome-euro.ucsc.edu

UCSC Genome Browser

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genome-euro.ucsc.edu genome-euro.ucsc.edu
1

Genome Browser Conditions of Use

http://www.genome-euro.ucsc.edu//conditions.html

Reset All User Settings. Genome Browser Conditions of Use. The UCSC Genome Browser was created by the UCSC Genome Browser Group. The Genome Browser and Blat software are free for academic, nonprofit, and personal use. A license. Is required for commercial use. Us if you use the Genome Browser software or data in a publication or web page. Program-driven use of this software is limited to a maximum of one hit every 15 seconds and no more than 5,000 hits per day. For assistance with questions or problems r...

2

Human chr21:33,031,597-33,041,570 - UCSC Genome Browser v345

http://www.genome-euro.ucsc.edu/cgi-bin/hgTracks?db=hg19&amp;position=lastDbPos

Reset All User Settings. In Other Genomes (Convert). Reset All User Settings. UCSC Genome Browser on Human Feb. 2009 (GRCh37/hg19) Assembly. Title='move 10% to the right'. Title='move 47.5% to the right'. Title='move 95% to the right' zoom in. Chr21:33,031,597-33,041,570. Title='move start position to the right'. Title='move end position to the right'. Use drop-down controls below and press refresh to alter tracks displayed. Tracks with lots of items will automatically be displayed in more compact modes.

3

Lift Genome Annotations

http://www.genome-euro.ucsc.edu/cgi-bin/hgLiftOver

Reset All User Settings. Minimum ratio of bases that must remap:. BED 4 to BED 6 Options. Allow multiple output regions:. Minimum hit size in query:. Minimum chain size in target:. Min ratio of alignment blocks or exons that must map:. If thickStart/thickEnd is not mapped, use the closest mapped base:. Paste in data ( BED. Or upload data from a file ( BED. Or chrN:start-end in plain text format):. To lift genome annotations locally on Linux systems, download the liftOver.

4

Genome Browser Training

http://www.genome-euro.ucsc.edu//training

Reset All User Settings. Getting Help with the UCSC Genome Browser. A Genome Browser Workshop! Do you suspect that there is a lot more to the Genome Browser than you have been using? Timeslots are available to host a Genome Browser workshop at your institution. Thanks to the funding support of NHGRI, we are able to offer hands-on Genome Browser training onsite at your institution, tailored to your audience's level of expertise. Catch one of our training sessions in your area:. February 21-22, 2017. Step-...

5

UCSC Genome Browser Home

http://www.genome-euro.ucsc.edu/index.html

Reset All User Settings. Interactively visualize genomic data. Rapidly align sequences to the genome. Download data from the Genome Browser database. Get functional effect predictions for variant calls. Combine data sources from the Genome Browser database. Find genes that are similar by expression and other metrics. Genome Browser in a Box (GBiB). Run the Genome Browser on your laptop or server. Rapidly align PCR primer pairs to the genome. Convert genome coordinates between assemblies.

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Reset All User Settings. Interactively visualize genomic data. Rapidly align sequences to the genome. Download data from the Genome Browser database. Get functional effect predictions for variant calls. Combine data sources from the Genome Browser database. Find genes that are similar by expression and other metrics. Genome Browser in a Box (GBiB). Run the Genome Browser on your laptop or server. Rapidly align PCR primer pairs to the genome. Convert genome coordinates between assemblies.

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