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Macromolecular Geometry

Parameter Sets for Geometry Programs. Geometry library with sample programs. Libproteingeometry-2.3.1.tgz. Full distribution v2.3.1) ( README. Provided by Donald Gaffney at U Vermont). For calculating geometric quantities, available in a 'basic version'. Which includes accessible surface and volume among other calculations, and an advanced version. Which does only volume and surface calculations and has extra parameter choices. (This was set up by Susan Chacko. PGC: The Protein Geometry Calculator.

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Macromolecular Geometry | geometry.molmovdb.org Reviews
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Parameter Sets for Geometry Programs. Geometry library with sample programs. Libproteingeometry-2.3.1.tgz. Full distribution v2.3.1) ( README. Provided by Donald Gaffney at U Vermont). For calculating geometric quantities, available in a 'basic version'. Which includes accessible surface and volume among other calculations, and an advanced version. Which does only volume and surface calculations and has extra parameter choices. (This was set up by Susan Chacko. PGC: The Protein Geometry Calculator.
<META>
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1 macromolecular geometry
2 citation info
3 nucprot
4 packing eff online
5 old front page
6 downloadable software
7 documentation
8 nucprot site
9 windows binaries
10 src diff
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macromolecular geometry,citation info,nucprot,packing eff online,old front page,downloadable software,documentation,nucprot site,windows binaries,src diff,a server,at the nih,pgc 10b tar gz,readme,screenshots,other resources,picture gallery,a script
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Macromolecular Geometry | geometry.molmovdb.org Reviews

https://geometry.molmovdb.org

Parameter Sets for Geometry Programs. Geometry library with sample programs. Libproteingeometry-2.3.1.tgz. Full distribution v2.3.1) ( README. Provided by Donald Gaffney at U Vermont). For calculating geometric quantities, available in a 'basic version'. Which includes accessible surface and volume among other calculations, and an advanced version. Which does only volume and surface calculations and has extra parameter choices. (This was set up by Susan Chacko. PGC: The Protein Geometry Calculator.

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Index of /files/libproteingeometry/data

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NucProt Parameter Set

http://geometry.molmovdb.org/NucProt

Traditionally, for biomolecular packing calculations research has focused on proteins. Besides proteins, RNA is the other large biomolecule that has tertiary structure interactions and complex packing. No one has yet quantitatively investigated RNA packing or compared its packing to that of proteins because, until recently, there were no large RNA structures. Here we address this question in detail, using Voronoi volume calculations on a set of high-resolution RNA crystal structures.

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Protein: April 2009

http://prakash-protein.blogspot.com/2009_04_01_archive.html

Friday, April 24, 2009. E-learning (works in Real Player/IE) , Databases, Tools. Http:/ hydra.icgeb.trieste.it/dpx/. DPX server - To calculate Atom Depth. Http:/ crick.mbu.iisc.ernet.in/ PIC/job.html. Protein Intxn Calculator, Intra-/Inter- protein calculation. Http:/ propka.ki.ku.dk/. To calculate AAs pKa values in Protein (Online web server and Downloadable) and gives AAs location (buried/surface). Http:/ geometry.molmovdb.org/. Volume and Packing Efficiency (Voronoi) Calculations. View my complete pro...

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Permissions - GersteinInfo

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UNLESS OTHERWISE NOTATED, all the material on this site - including lectures. Free Academic Use with Proper Acknowledgement. Electronic preprints and E-prints. Free Academic Use with Proper Acknowledgement. A statement like the following is sufficient: "This material is adapted from the Mark Gerstein's Lab website (gersteinlab.org). Please consult the website regarding reuse. Where appropriate, we'd, of course, appreciate a link to the appropriate resource. Electronic preprints and E-prints. We try to ma...

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FAQ - GersteinInfo

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How to Edit this. Our current FAQs page may be found here. Frequently asked questions about lab programs ( mailman version. Browse FAQ here http:/ groups.google.com/group/gerstein-lab-faqs? Regarding the Science paper titled Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights. The table headings unfortunately got switched at some unknown point during copy editing. We have posted a note to that point on our site. Do let me know if you need more help on this! MolMovDB: ...

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Protein: Protein - Properties

http://prakash-protein.blogspot.com/2009/04/protein-properties.html

Friday, April 24, 2009. E-learning (works in Real Player/IE) , Databases, Tools. Http:/ hydra.icgeb.trieste.it/dpx/. DPX server - To calculate Atom Depth. Http:/ crick.mbu.iisc.ernet.in/ PIC/job.html. Protein Intxn Calculator, Intra-/Inter- protein calculation. Http:/ propka.ki.ku.dk/. To calculate AAs pKa values in Protein (Online web server and Downloadable) and gives AAs location (buried/surface). Http:/ geometry.molmovdb.org/. Volume and Packing Efficiency (Voronoi) Calculations.

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Macromolecular Geometry

Parameter Sets for Geometry Programs. Geometry library with sample programs. Libproteingeometry-2.3.1.tgz. Full distribution v2.3.1) ( README. Provided by Donald Gaffney at U Vermont). For calculating geometric quantities, available in a 'basic version'. Which includes accessible surface and volume among other calculations, and an advanced version. Which does only volume and surface calculations and has extra parameter choices. (This was set up by Susan Chacko. PGC: The Protein Geometry Calculator.

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