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BaseSpace Help | help.basespace.illumina.com Reviews

https://help.basespace.illumina.com

basespace help site

INTERNAL PAGES

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1

How to Combine Samples

https://help.basespace.illumina.com/articles/tutorials/combine-samples

How to Combine Samples. How to Combine Samples. Select the Projects icon and click on the desired project. In the Projects page, click on the Samples tab and choose the samples that you want to combine together. Once selected, click on the 'Combine' button at the top. In the pop up window, enter the name for the new combined sample and click on 'Combine'. The new combined sample appears in the list of already present samples. BaseSpace Sequence Hub UI Overview. Getting Started with BaseSpace Sequence Hub.

2

How to delete data and restore

https://help.basespace.illumina.com/articles/tutorials/delete-data-and-restore

How to delete data and restore. How to delete data and restore. Within Hub, users are able to manage the data in their accounts through a few mechanisms, one of which is the ability to Delete. BaseSpace Hub Users have the ability to delete:. In order to delete any data from BaseSpace Hub, you must be the owner. If you delete something that you do not own, it will be removed from your account and you will no longer be a collaborator for that dataset. Option available in the top menu. In the Runs list, cli...

3

Release Notes

https://help.basespace.illumina.com/release-notes

Release notes for BaseSpace Sequence Hub and related projects. October 18, 2016 - 4.13.0 - More Usage Tracking. October 4, 2016 - 4.12.0 - Usage Tracking. September 6, 2016 - 4.11.0 - End of Free Trial Period. August 9, 2016 - 4.10.0 - Enterprise Accounts and Free Trial Subscription. July 28, 2016 - 4.9.0 - UI Updates. June 30, 2016 - 4.8.0 - Improved Run Details page. June 21, 2016 - 4.7.0 - More enterprise features. May 26, 2016 - 4.6.0 - Enterprise domains. July 3, 2015 - 3.20.3 - Application ...June ...

4

Articles

https://help.basespace.illumina.com/articles

Browse list of tutorials, walkthroughs and articles. Read all the introductory articles about BaseSpace Sequence Hub. Basespace Sequence Hub UI Overview. Accessing Help, Feedback and Support. Workflows within BaseSpace Sequence Hub. Data Organization and Management. Learn to manage your data and files in BaseSpace Sequence Hub. How to share data using Get Link option. How to share data using Email option. Basic and Free Trial accounts. BaseSpace Sequence Hub Workgroups. How to use workgroups. Everything ...

5

New to BaseSpace Sequence Hub?

https://help.basespace.illumina.com/articles/new-to-basespace

New to BaseSpace Sequence Hub? Planning a sequencing run with Prep tab. Monitor your sequencing runs. Enter Analysis input and parameters. Share with one or many users. Manage data in your account. Learn about the features in depth. New to BaseSpace Sequence Hub? Planning a sequencing run with Prep tab. Create biological samples to be sequenced directly in Hub. Create new biological samples. Use Existing Biological samples. On the Prep Tab click the "Biological Samples" box. How to Prep Libraries. Monito...

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LINKS TO THIS WEBSITE

blog.basespace.illumina.com blog.basespace.illumina.com

New Download Experience | BaseSpace Informatics Blog

https://blog.basespace.illumina.com/2015/04/11/new-download-experience

April 11, 2015. With our newest release today, we are happy to introduce a revamped download experience from our run details and analysis details page. This new experience takes advantage of the existing BaseSpace Downloader, with a couple new filtering options. From the run detail page, upon selecting download, you will now be presented with the following dialog:. Once at the Analysis Details page, you may select download button and be presented with the following dialog:. We have received feedback rega...

blog.basespace.illumina.com blog.basespace.illumina.com

New RNA Apps in BaseSpace | BaseSpace Informatics Blog

https://blog.basespace.illumina.com/2015/04/24/new-rna-apps-in-basespace

April 24, 2015. New RNA Apps in BaseSpace. We are excited to launch the TruSeq Targeted RNA v1.0. And Small RNA v1.0. Core Apps in BaseSpace, which are some of the most feature-rich Apps we have launched to date. TruSeq Targeted RNA v1.0. Small RNA v1.0. A high level overview of the Apps is provided below. More detailed information about the Apps can be found in their respective Core Apps application guides. TruSeq Targeted RNA v1.0 App. Small RNA v1.0 app. The BaseSpace Small RNA v1.0 App analyzes s...

blog.basespace.illumina.com blog.basespace.illumina.com

BaseSpace 2015 WWDC @ The Broad | BaseSpace Informatics Blog

https://blog.basespace.illumina.com/2015/03/31/basespace-2015-wwdc-the-broad

March 31, 2015. BaseSpace 2015 WWDC @ The Broad. Space is limited, so please register early. Create your own Apps in BaseSpace! Publish your favorite novel algorithms or applications on BaseSpace. At this free event, you will learn how to build and launch your own bioinformatics Apps in BaseSpace. Make an impact on the analysis and interpretation of genomic information by publishing your own BaseSpace App! Friday, April 24, 8:00 AM to 5:00 PM The Broad Institute. Space is limited, so please register early.

blog.basespace.illumina.com blog.basespace.illumina.com

Features | BaseSpace Informatics Blog

https://blog.basespace.illumina.com/category/features

RSS for this section. July 6, 2016. We are pleased to announce the third release. Version 0.8) of BaseSpaceCLI, which includes a major new tool and a number of minor features. To install the new release, run this script:. Sudo bash -c "$(curl -L https:/ bintray.com/artifact/download/basespace/helper/install.sh)". This release of BaseSpaceCLI we are introducing. A new high-performance copy tool called BaseSpace Copy or bscp, which provides. June 24, 2016. Announcing BaseMount with Trash control. BaseMount...

blog.basespace.illumina.com blog.basespace.illumina.com

Release Notes | BaseSpace Informatics Blog

https://blog.basespace.illumina.com/category/release-notes

RSS for this section. April 11, 2015. With our newest release today, we are happy to introduce a revamped download experience from our run details and analysis details page. This new experience takes advantage of the existing BaseSpace Downloader, with a couple new filtering options. April 9, 2015. Introducing the ability to Launch Apps via the API! We are happy to announce the introduction of API-driven App launch capabilities on BaseSpace. We are now extending the BaseSpace API. March 13, 2015. The new...

blog.basespace.illumina.com blog.basespace.illumina.com

Ilya Chorny | BaseSpace Informatics Blog

https://blog.basespace.illumina.com/author/ichorny

Archive by Author Ilya Chorny. March 10, 2016. New RNA-Seq Alignment App with support for TruSight RNA Pan-Cancer and more. With the launch of the TruSight RNA Pan-Cancer panel. A targeted enrichment panel for the detection of variants, fusions, and gene expression profiles in 1385 cancer-associated genes, Illumina is pleased to provide an intuitive BaseSpace App, RNA-Seq Alignment v 1.0. That supports simple push button analysis of the data. August 3, 2015. The BaseSpace App store. July 13, 2015. The Ca...

blog.basespace.illumina.com blog.basespace.illumina.com

Introducing the ability to Launch Apps via the API! | BaseSpace Informatics Blog

https://blog.basespace.illumina.com/2015/04/09/introducing-the-ability-to-launch-apps-via-the-api

April 9, 2015. Introducing the ability to Launch Apps via the API! We are happy to announce the introduction of API-driven App launch capabilities on BaseSpace. We are now extending the BaseSpace API. To include app launch, so that with a call to a RESTful API endpoint, you can launch a BaseSpace app on your data. With the new feature in the API, you can now:. Create scripts to automate testing of your app for developers. There are several ways to make use of the API-driven app launch. One is to use ...

developer.basespace.illumina.com developer.basespace.illumina.com

Native App Overview

https://developer.basespace.illumina.com/docs/content/documentation/native-apps/native-app-overview

BaseSpace Native App Engine Overview. How do Native Apps work? Benefits for App Devs. Native vs Web Apps. Three Components of a Native Application. Create the Input Form. Create your Docker Image. Create your Report using HTML5 and Liquid. BaseSpace Native App Engine Overview. How do Native Apps work? The following diagram is an overview of the Native Apps workflow:. User configures the input form that the developer put together for the app in BaseSpace then clicks Continue. Running Native Apps may be mo...

blog.basespace.illumina.com blog.basespace.illumina.com

Greg Roberts | BaseSpace Informatics Blog

https://blog.basespace.illumina.com/author/grobertsatillumina

Archive by Author Greg Roberts. April 1, 2015. MiSeq Analysis Reports Upgrade. We are happy to announce newly revamped reports for all MiSeq based analyses. BaseSpace automatically runs an analysis package called MiSeq Reporter. Similar to what is available on instrument, upon completion of MiSeq run uploads. With the advent of the rich reporting tools available in the Native App Engine. Here are some example reports and charts:. March 13, 2015. Introducing the New BaseSpace HelpCenter. This is just the ...

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BaseSpace Help

Welcome to our HelpCenter. Learn how to unlock the potential of Illumina's next-generation informatics ecosystem. Get started and Explore BaseSpace. Everything in one place; All our articles. Start building the next generation of sequencing apps. How to share data using Email option. How to transfer ownership. How to delete/restore data. How to combine samples. How to switch existing account to a new username/email. Do you want to learn more about BaseSpace? Browse through our videos. Send us an email.

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