nextgenseq.blogspot.com
Next-Gen Sequencing: Software
http://nextgenseq.blogspot.com/2008/10/software.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Oct 19, 2008. Software for basic next-gen sequencing operations. Each of the commercial vendors has their own proprietary software, so we will emphasize the open source. A great page about Next-Gen software on SeqAnswers. Alternative base calling for 454 sequencer with improved quality scores. Developed by the Marth lab at Boston College. Alignment to a Reference Sequence. D Hernandez, P...
blogs.biochem.ncsu.edu
» A Happy Glucose Holiday Season - Biochem Blogs
https://blogs.biochem.ncsu.edu/glucoseholiday
Biochemistry blog, science writing. A Happy Glucose Holiday Season. Posted by : Clay Clark. On : December 4, 2012. A capella singing group. Clay Clark – @biochemprof. If you don’t believe in pathways, you might want to listen. Each year in his biochemistry class, Dr. Jim Knopp sings “the glucose song.” This year, he had special visitors from Ladies in Red. An all-female a cappella group associated with the Music Department. To see the lyrics:. To be sung to the tune of Grandma got run over by a reindeer.
blogs.biochem.ncsu.edu
» Ebola Virus VP40 -A protein straight out of “transformers” - Biochem Blogs
https://blogs.biochem.ncsu.edu/ebolavp40
Biochemistry blog, science writing. Ebola Virus VP40 -A protein straight out of transformers. Posted by : Clay Clark. On : October 10, 2014. This little guy may have inflicted Ebolavirus on humanity. Source: http:/ www.inaturalist.org/observations/358322. Starting with what was known about Ebolavirus and its VP40 protein, this group made several mutants of VP40 and used x-ray crystallography structural analysis to confirm the hypothesis about VP40 conformational changes. VP40 hexamer structure. Notic...
blogs.biochem.ncsu.edu
» Using zebrafish to find human cancer drugs - Biochem Blogs
https://blogs.biochem.ncsu.edu/using-zebrafish-to-find-human-cancer-drugs
Biochemistry blog, science writing. Using zebrafish to find human cancer drugs. Posted by : Clay Clark. On : April 2, 2012. Clay Clark – @biochemprof. My lab in the Department of Molecular and Structural Biochemistry. And Dr. Jeff Yoder. In the Department of Molecular Biomedical Sciences. At NC State University applied for an award from the College of Agriculture and Life Sciences (CALS) at NCSU. The other two finalists in the Faculty category are Ignazio Carbone. This was an interesting process because ...
blogs.biochem.ncsu.edu
» The traveling biochemist: Cell death in Barga, Italy - Biochem Blogs
https://blogs.biochem.ncsu.edu/the-traveling-biochemist-cell-death-in-barga-italy
Biochemistry blog, science writing. The traveling biochemist: Cell death in Barga, Italy. Posted by : Clay Clark. On : September 3, 2012. A few weeks ago I attended my first Gordon Conference on Cell Death in Barga, Italy with my PI, Clay Clark. And traversed Italy dodging Italian drivers who have no regard for lanes or speed limits. It is actually a pretty fun experience to drive in Italia! The conference began that evening with two excellent keynote addresses presented by Martin Raff. How all of these ...
blogs.biochem.ncsu.edu
» Apps for the academic: Checking in with the iPad - Biochem Blogs
https://blogs.biochem.ncsu.edu/apps-for-the-academic-checking-in-with-the-ipad
Biochemistry blog, science writing. Apps for the academic: Checking in with the iPad. Posted by : Clay Clark. On : November 1, 2012. Clay Clark – @biochemprof. I also note that I don’t have an iPhone, so my apps are not optimized for use with both devices. Here I define productivity as apps that augment my work activities or apps that allow me to sync activities with my desktop computer. 8211; A very nice app for annotating pdf files, with lots of bells-and-whistles. I use this program to sign contra...
nextgenseq.blogspot.com
Next-Gen Sequencing
http://nextgenseq.blogspot.com/2015/07/i-am-writing-new-lectures-and.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Jul 29, 2015. I am writing new lectures and organizing a lot of teaching material to teach 4 (! Https:/ drive.google.com/open? We are also planning to make Screencast type videos of most of the lectures, which get dumped on YouTube. I will try to find some sensible way of organizing them and sharing via this NGS blog. Subscribe to: Post Comments (Atom). View my complete profile. Accurate...
nextgenseq.blogspot.com
Next-Gen Sequencing: New 'Next-Gen Seq 2' book is at the printer
http://nextgenseq.blogspot.com/2015/05/new-next-gen-seq-2-book-is-at-printer.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. May 28, 2015. New 'Next-Gen Seq 2' book is at the printer. The second edition of the Next-Generation Sequencing Informatics. Book (that I edit) is at the printer and available for pre-order at Cold Spring Harbor Press. We think it will ship on June 30th, maybe a bit sooner. Here is the official publication blurb:. Next-Generation DNA Sequencing Bioinformatics, Second edition,. Addresses ...
nextgenseq.blogspot.com
Next-Gen Sequencing: September 2014
http://nextgenseq.blogspot.com/2014_09_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Sep 10, 2014. Introduction to Biostatistics and Bioinformatics course at NYUMC. The lectures will be posted to YouTube each week. Here are our first ones from yesterday:. Intro Lecture/Data Visualization: http:/ youtu.be/YDUPzq7i49U. Python programming #1: http:/ youtu.be/r2N-thn7j4o. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Vendors (NG Seq machines).
nextgenseq.blogspot.com
Next-Gen Sequencing: July 2015
http://nextgenseq.blogspot.com/2015_07_01_archive.html
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Jul 31, 2015. Coffee Berry Borer genome published. Our paper on the de novo. Genome sequence and annotation of the Coffee Berry Borer (a beetle) is published today in Nature Scientific Reports. We are of course hoping that these genes can be used as some sort of target for control of the pest, which causes something like a billion $ of annual damage worldwide to our beloved coffee. Http:...
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