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Microbiology, Metagenomics and Bioinformatics - Johan Bengtsson-Palme, University of Gothenburg | Wisconsin Institute for Discovery

Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg Wisconsin Institute for Discovery. May 3, 2010. My name is Johan Bengtsson-Palme. I am currently a postdoctoral associate to Jo Handelsman’s lab. At the Wisconsin Institute for Discovery, part of the University of Wisconsin-Madison. While in the US, I am on a temporary leave from my position as assistant professor at the Sahlgrenska Academy at University of Gothenburg, Sweden. My research. April 3, 2018. Due to...

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Microbiology, Metagenomics and Bioinformatics - Johan Bengtsson-Palme, University of Gothenburg | Wisconsin Institute for Discovery | microbiology.se Reviews
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Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg Wisconsin Institute for Discovery. May 3, 2010. My name is Johan Bengtsson-Palme. I am currently a postdoctoral associate to Jo Handelsman’s lab. At the Wisconsin Institute for Discovery, part of the University of Wisconsin-Madison. While in the US, I am on a temporary leave from my position as assistant professor at the Sahlgrenska Academy at University of Gothenburg, Sweden. My research. April 3, 2018. Due to...
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Microbiology, Metagenomics and Bioinformatics - Johan Bengtsson-Palme, University of Gothenburg | Wisconsin Institute for Discovery | microbiology.se Reviews

https://microbiology.se

Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg Wisconsin Institute for Discovery. May 3, 2010. My name is Johan Bengtsson-Palme. I am currently a postdoctoral associate to Jo Handelsman’s lab. At the Wisconsin Institute for Discovery, part of the University of Wisconsin-Madison. While in the US, I am on a temporary leave from my position as assistant professor at the Sahlgrenska Academy at University of Gothenburg, Sweden. My research. April 3, 2018. Due to...

INTERNAL PAGES

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1

Metaxa FAQ - Microbiology, Metagenomics and Bioinformatics

http://microbiology.se/software/metaxa/metaxa-faq

Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. This FAQ intends to answer some of the questions we have gotten about the Metaxa software package. Please look through this document before contacting me with a question. If the FAQ does not answer your question, you are very welcome to send an e-mail with the question to metaxa [at] microbiology [dot] se The FAQ can also be downloaded as a PDF here. Does Metaxa work on Windows?

2

Publications - Microbiology, Metagenomics and Bioinformatics

http://microbiology.se/publications

Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. Hammarén R, Pal C, Östman M, Björlenius B, Flach C-F, Kristiansson E, Fick J, Tysklind M, Larsson DGJ: Elucidating selection processes for antibiotic resistance in sewage treatment plants using metagenomics. Science of the Total Environment,. Doi: 10.1016/j.scitotenv.2016.06.228. Hammarén R, Pal C, Bengtsson-Palme J. FARAO: The Flexible All-Round Annotation Organizer. Nilsson RH...

3

GoBiG 2013 - Microbiology, Metagenomics and Bioinformatics

http://microbiology.se/gobig/gobig-2013

Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. Thursday, January 31 (Master of Article: Kemal Sanli). Wednesday, February 27 (MoA: José Sanchez). Tuesday, March 19 (MoA: Chandan Pal). Monday, April 22 (MoA: Francesco Gatto). Thursday, May 30 (MoA: Amir Feizi). Wednesday, June 19 (Spring Special Meeting). Thursday, September 26 (MoA: Johan Bengtsson-Palme). Wednesday, October 30 (MoA: Chandan Pal). Jonathan A. Eisen.

4

Metaxa - Microbiology, Metagenomics and Bioinformatics

http://microbiology.se/software/metaxa

Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. Metaxa: A software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets. Antonie van Leeuwenhoek Journal of Microbiology. Download the Metaxa package. Version 1.1.2). Updated for version 1.1.2! 16th December 2011 1...

5

Summary of 2012 - Microbiology, Metagenomics and Bioinformatics

http://microbiology.se/yearly/summary-of-2012

Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. During 2012, I have mainly been working with the impact of antibiotic selection pressure on environmental communities from many different perspectives. I have published two papers during the year one on the software tool Megraft. And one on guidelines for quality control of ITS sequences. A very nice thing that happened during the year was the group secured 25 million SEK ( 2&#4...

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About us - University of Gothenburg, Sweden

http://interact.gu.se/about

Read more abput how we use cookies on gu.se. Department of Infectious Diseases. Phone: 46 (0) 31 342 4625. E-mail: joakim.larsson@fysiologi.gu.se. Department of Medical Biochemistry and Microbiology. Phone: 46 18 474 14175. E-mail: dan.andersson@imbim.uu.se. Department of Biological and Environmental Sciences. Phone: 46 (0) 31 786 2609. E-mail: hans.blanck@bioenv.gu.se. Phone: 46 70 586 6999. E-mail: mats.tysklind@chem.umu.se. Lab members involved in the INTERACT project:. 1 Joakim Larsson's group. E-mai...

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genomics: Calculating N50 and L50 of a contig assembly file

http://genomics-array.blogspot.com/2011/02/calculating-n50-of-contig-assembly-file.html

Saturday, February 26, 2011. Calculating N50 and L50 of a contig assembly file. Is the number of scaffolds that accounts for more than 50% of the genome assembly. Here is a small step by step protocol to calculate N50:. 1 Read Fasta file and calculate sequence length. 2 Sort length on reverse order. 3 Calculate Total size. Read Fasta File and compute length # #. Push (@arr, $length);. TotalLength = $length;. Length = length($ );. My @sort = sort {$b = $a} @arr;. Sort -g -r inputfile out. Earlier I have b...

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Microbiology, Metagenomics and Bioinformatics - Johan Bengtsson-Palme, University of Gothenburg | Wisconsin Institute for Discovery

Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg Wisconsin Institute for Discovery. May 3, 2010. My name is Johan Bengtsson-Palme. I am currently a postdoctoral associate to Jo Handelsman’s lab. At the Wisconsin Institute for Discovery, part of the University of Wisconsin-Madison. While in the US, I am on a temporary leave from my position as assistant professor at the Sahlgrenska Academy at University of Gothenburg, Sweden. My research. April 3, 2018. Due to...

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