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Petri Dish Talk | Thoughts on contemporary life science from a young scientist

Thoughts on contemporary life science from a young scientist

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Petri Dish Talk | Thoughts on contemporary life science from a young scientist | petridishtalk.com Reviews
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Thoughts on contemporary life science from a young scientist
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1 petri dish talk
2 skip to content
3 about me
4 larr;
5 older posts
6 in silico
7 fig5 pileup difference
8 3 comments
9 filed under genomics
10 tagged as bioinformatics
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Petri Dish Talk | Thoughts on contemporary life science from a young scientist | petridishtalk.com Reviews

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Thoughts on contemporary life science from a young scientist

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Hybrid Assemblies From Short and Long-Reads for INDEL Resolution, Finding The Missing Puzzle Piece | Petri Dish Talk

https://petridishtalk.com/2014/05/22/hybrid-assemblies-from-short-and-long-reads-for-indel-resolution-finding-the-missing-puzzle-piece

Not a Big Deal, GRCh38: A Semi-Casual Comparison of the New Human Reference Genome. Retooling Analysis Pipelines from Human to EBOV NGS Data for Rapid Alignment and Strain Identification →. May 22, 2014 · 6:42 pm. Hybrid Assemblies From Short and Long-Reads for INDEL Resolution, Finding The Missing Puzzle Piece. Fig 1: A Low Complexity Region, featuring Homopolymers, leading to Ambiguous Mapping. Fig 2: Using Haplotype Calculations with Dindel, SeqAn, and Boost C Libraries to Resolve INDELs. Super Happy ...

2

About Me | Petri Dish Talk

https://petridishtalk.com/me

Live and play in the city of San Francisco. Love artsy/off-kilter girls, and have been seen taking tumbles on my bike around town after a beer or two. T the moment I’m writing grant proposals, giving lectures, writing code and doing research for a bioinformatics company with a few friends, calling itself GeneDrop. You might have also seen me at Bio Tech, for which I share responsibility with a couple of other colleagues. Ecently, I’ve been helping companies like Nebula. 8211; Mo Rahman. Stemming Methodol...

3

Xamarin | Petri Dish Talk

https://petridishtalk.com/tag/xamarin

January 14, 2014 · 12:47 pm. Not a Big Deal, GRCh38: A Semi-Casual Comparison of the New Human Reference Genome. Over christmas the Genome Reference Consortium gave all of us doing. Life-science a wonderful present, or maybe it was just a lump of coal. GRCh38, the newest human reference genome assembly, was released to cheers and jeers abound. Fig1: Chromosome 20 Assembly With BWA. Fig2: Ts/Tv Ratios between GRCh37 and 38. Fig3: High-level Alignment Map Topology. Between GRCh37.69 and 38. In comb...By fa...

4

C# | Petri Dish Talk

https://petridishtalk.com/tag/c

January 14, 2014 · 12:47 pm. Not a Big Deal, GRCh38: A Semi-Casual Comparison of the New Human Reference Genome. Over christmas the Genome Reference Consortium gave all of us doing. Life-science a wonderful present, or maybe it was just a lump of coal. GRCh38, the newest human reference genome assembly, was released to cheers and jeers abound. Fig1: Chromosome 20 Assembly With BWA. Fig2: Ts/Tv Ratios between GRCh37 and 38. Fig3: High-level Alignment Map Topology. Between GRCh37.69 and 38. In comb...By fa...

5

Bioinformatics | Petri Dish Talk

https://petridishtalk.com/tag/bioinformatics

October 2, 2014 · 10:51 am. Retooling Analysis Pipelines from Human to EBOV NGS Data for Rapid Alignment and Strain Identification. Can we use pipelines developed for human NGS analysis and quickly apply them for viral analysis? Being in the news, it seemed like a good time to try. Just as with a human sequencing project, it’s helpful if we have a good reference genome. The NCBI has four different ebola strain reference files located at their ftp:. Accession: NC 002549.1 : 18,959 bp linear cRNA. EBOV mok...

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Understanding Translational Effects of Variants With SnpEff

https://mokas.svbtle.com/understanding-translational-effects-of-variants-with-snpeff

Mo Rahman is writing on the Svbtle. April 5, 2014. Understanding Translational Effects of Variants With SnpEff. Once we have assembled the genomes of our subject(s) [1]. Generated a list of variants, annotated these variants with relevant databases (e.g. dbSNP) [3]. We may now be interested in investigating the structural and translational effects of genomic variants on proteins. Interacting with protein structures in. It should be noted that the choice of reference build is not necessarily arbitrary&#46...

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Looking through the sheets of existence. Layered forever. Growing and shrinking.

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Looking through the sheets of existence. Layered forever. Growing and shrinking. Ldquo;The sad truth is that most evil is done by people who never make up their minds to be good or evil”. Audio: Open Source Radio].

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Looking through the sheets of existence. Layered forever. Growing and shrinking. Https:/ open.spotify.com/track/4o4lCHQOno8qWO7ncm3ZpB.

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Looking through the sheets of existence. Layered forever. Growing and shrinking. Always running around trying to find certainty.

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Petri Dish Talk | Thoughts on contemporary life science from a young scientist

January 14, 2014 · 12:47 pm. Not a Big Deal, GRCh38: A Semi-Casual Comparison of the New Human Reference Genome. Over christmas the Genome Reference Consortium gave all of us doing. Life-science a wonderful present, or maybe it was just a lump of coal. GRCh38, the newest human reference genome assembly, was released to cheers and jeers abound. Fig1: Chromosome 20 Assembly With BWA. Fig2: Ts/Tv Ratios between GRCh37 and 38. Fig3: High-level Alignment Map Topology. Between GRCh37.69 and 38. In comb...By fa...

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