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PPS 1.0 - PTMs Peptide Scanner

Met and Ace. Regulators. Last update: Apr. 1st, 2018. Diella, et al., 2004. Diella, et al., 2008. And UniProt ( Boutet, et al., 2007. Have been developed to contain PTM information of proteins. However, these annotations are usually not integrated. Moreover, due to the diversity and heterogeneity of protein names, it's difficult to fully obtain the known PTM information for a given protein, by database searching. In this work, we developed a novel software of PTMs Peptide Scanner (PPS). Taken together, w...

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PPS 1.0 - PTMs Peptide Scanner | pps.biocuckoo.org Reviews

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Met and Ace. Regulators. Last update: Apr. 1st, 2018. Diella, et al., 2004. Diella, et al., 2008. And UniProt ( Boutet, et al., 2007. Have been developed to contain PTM information of proteins. However, these annotations are usually not integrated. Moreover, due to the diversity and heterogeneity of protein names, it's difficult to fully obtain the known PTM information for a given protein, by database searching. In this work, we developed a novel software of PTMs Peptide Scanner (PPS). Taken together, w...

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PPS 1.0 - PTMs Peptide Scanner | pps.biocuckoo.org Reviews

https://pps.biocuckoo.org

Met and Ace. Regulators. Last update: Apr. 1st, 2018. Diella, et al., 2004. Diella, et al., 2008. And UniProt ( Boutet, et al., 2007. Have been developed to contain PTM information of proteins. However, these annotations are usually not integrated. Moreover, due to the diversity and heterogeneity of protein names, it's difficult to fully obtain the known PTM information for a given protein, by database searching. In this work, we developed a novel software of PTMs Peptide Scanner (PPS). Taken together, w...

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pps.biocuckoo.org

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PPS 1.0 - PTMs Peptide Scanner

http://pps.biocuckoo.org/links.php

Last update: Feb. 28th, 2014. A proteomics server of the Swiss Institute of Bioinformatics (SIB) which analyzes protein sequences and structures and two-dimensional gel electrophoresis (2-D Page electrophoresis). The server functions in collaboration with the European Bioinformatics Institute. ExPASy also produces the protein sequence knowledgebase, UniProtKB/Swiss-Prot, and its computer annotated supplement, UniProtKB/Trembl. 3 GPS 2.0. 4 PPSP 1.0. 5 SUMOsp 2.0. 6 SSP 1.0. 7 CSS-Palm 2.0. Previously, we...

2

PPS 1.0 - PTMs Peptide Scanner

http://pps.biocuckoo.org/down.php

Last update: Feb. 28th, 2014. PPS 10 is ONLY freely available for academic research. And for commercial usage, please contact us. Please download PPS 1.0 installation package by clicking the link below:. Current Release: PPS 1.0. PPS 10 windows 20081205.exe. Mac OS X Platform. PPS 10 macos 20081205.dmg. PPS 10 unix 20081205.sh. After download just double-click on the software package to begin installation. Then follow the user prompts through the installation. But the installer says the file is damaged.

3

PPS 1.0 - PTMs Peptide Scanner

http://pps.biocuckoo.org/index.php

Last update: Feb. 28th, 2014. Diella, et al., 2004. Diella, et al., 2008. And UniProt ( Boutet, et al., 2007. Have been developed to contain PTM information of proteins. However, these annotations are usually not integrated. Moreover, due to the diversity and heterogeneity of protein names, it's difficult to fully obtain the known PTM information for a given protein, by database searching. In this work, we developed a novel software of PTMs Peptide Scanner (PPS). 70 ( Diella, et al., 2004. Taken together...

4

PPS 1.0 - PTMs Peptide Scanner

http://pps.biocuckoo.org/faq.php

Last update: Feb. 28th, 2014. Is PPS 1.0 a predictor for post-translational modification (PTM) sites prediction? To predict potentially novel PTM sites. How to use PPS 1.0 software. You can find the latest version of PPS at http:/ pps.biocuckoo.org/down.php. Then please input your one or multiple protein sequences in FASTA format into INPUT form. Then please choose PTM type, and click submit to start searching. I have 20,000 proteins for prediction, what should I do? Page, and choose the proper JRE packa...

5

PPS 1.0 - PTMs Peptide Scanner

http://pps.biocuckoo.org/online.php

Last update: Feb. 28th, 2014. To use PPS 1.0 in your web browser, you should install Sun Microsystems Java Runtime Environment (JRE). To get the latest version of the JRE, please visit the http:/ java.com. Page, and choose the proper JRE package based on your operating system and browser. For convenience, you can also download the JRE packages from our website. If your sequences 1000. Please download the local version. The local version is more powerful and has more functions. Sequences in FASTA format.

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tsp.biocuckoo.org

GPS-TSP 1.0 - Prediction of Tyrosine of Sulfation Sites

http://tsp.biocuckoo.org/userguide.php

Last update: Oct. 20th, 2014. In DOSS 1.0 database, we tried to make it more powerful and convenient to be used. The online service and local packages were provided. This USAGE is prepared for the online service of the database. The DOSS 1.0 provide the search option and advance options. ( DOSS ID. Please click on the Example button to search C3AR1 in Gene Name field. By clicking on the Submit button, the related doss proteins will be shown. Will be shown by clicking on the Submit button. You can browse ...

tsp.biocuckoo.org

GPS-TSP 1.0 - Prediction of Tyrosine of Sulfation Sites

http://tsp.biocuckoo.org/index.php

Last update: Oct. 20th, 2014. 8251; GPS-TSP INTRODUCTION:. Tyrosine sulfation is a ubiquitous PTM that predominantly modifies proteins in the secretory pathway ( Bundgaard. Walsh and Jefferis, 2006. And plays an important role in regulating chemotaxis ( Monigatti. Walsh and Jefferis, 2006. Inflammatory response ( Gao. And cell adhesion ( Stone. In animals, the sulfation is catalyzed by two closely related tyrosylprotein sulfotransferases (TPST-1 and TPST-2) ( Monigatti. Walsh and Jefferis, 2006. Experime...

tsp.biocuckoo.org

GPS-TSP 1.0 - Prediction of Tyrosine of Sulfation Sites

http://tsp.biocuckoo.org/download.php

Last update: Oct. 20th, 2014. GPS-TSP 1.0 Software Download. GPS-TSP 1.0 is ONLY freely available for academic research. And for commercial usage, please contact us. Please download GPS-TSP 1.0 installation package by clicking the link below:. Current Release: GPS-TSP 1.0.0. GPS-TSP 1 0 windows 20141127.exe. Mac OS X Platform. GPS-TSP 1 0 macos 20141127.dmg. GPS-TSP 1 0 unix 20141127.sh. Please read the Manual. 8251; Dataset Download:. British Indian Ocean Territory. Congo, the Democratic Republic of the.

csspalm.biocuckoo.org

CSS-Palm - Palmitoylation Site Prediction

http://csspalm.biocuckoo.org/down.php

Last update: Feb. 27th, 2014. The CSS-Palm is ONLY freely available for academic research. And for commercial usage, please contact us. Please download CSS-Palm installation package by clicking the link below:. For the prediction of N-Myristoylation, S-Farnesylation and S-Geranylgeranylation sites, please use GPS-Lipid. Current Release: CSS-Palm 4.0. CSS-Palm 4.0 windows 20131223.exe. Mac OS X Platform. CSS-Palm 4.0 macos 20131223.dmg. CSS-Palm 4.0 unix 20131223.sh. Archive: CSS-Palm 3.0.

csspalm.biocuckoo.org

CSS-Palm - Palmitoylation Site Prediction

http://csspalm.biocuckoo.org/database.php

Last update: Feb. 27th, 2014. PALM Database Online Service. Please input one or multiple keywords to search the Palmitoylation find the related information you need:. Palmitoylation database provides three online advance options, including advance search,browse, BLAST search. Please input a PROTEIN.

polo.biocuckoo.org

GPS-Polo 1.0 - Prediction for Polo-like kinases

http://polo.biocuckoo.org/faq.php

Last update: Feb. 28th, 2014. How to use GPS-Polo 1.0 web service? Please visit the latest version of GPS-Polo 1.0 at http:/ polo.biocuckoo.org/down.php. I can't view the program properly, what should I do? Page or our website. However, for Mac OS, the GPS-Polo 1.0 could be used directly without any additional packages. Finally, if you can still not view the program properly, please send us an email and tell me the OS information on your computer. We will resolve the problem ASAP. And Dr. Jian Ren. By de...

polo.biocuckoo.org

GPS-Polo 1.0 - Prediction for Polo-like kinases

http://polo.biocuckoo.org/down.php

Last update: Feb. 28th, 2014. GPS-Polo 1.0 is ONLY freely available for academic research. And for commercial usage, please contact us. Please download GPS-Polo 1.0 installation package by clicking the link below:. Current Release: GPS-Polo 1.0. GPS-Polo 1 0 windows 20110330.exe. Mac OS X Platform. GPS-Polo 1 0 macos 20110330.dmg. GPS-Polo 1 0 unix 20110330.sh. After download just double-click on the software package to begin installation. Then follow the user prompts through the installation.

gps.biocuckoo.org

GPS 3.0 - Kinase-specific Phosphorylation Site Prediction

http://gps.biocuckoo.org/userguide.php

Last update: Sep. 10th, 2014. 8251; User Guide:. How to use GPS 3.0 software? You can find the latest version of GPS 3.0 at http:/ gps.biocuckoo.org/download.php. Then download and install the GPS 3.0 software to your computer.Currently, GPS 3.0 is implemented in JAVA and could be installed on a computer with Windows/Linux/Unix/Mac OS . And we also wrote a manual for users which included in the installation package. What's the difference between simple prediction and comprehensive prediction? The value c...

tsp.biocuckoo.org

GPS-TSP 1.0 - Prediction of Tyrosine of Sulfation Sites

http://tsp.biocuckoo.org/online.php

Last update: Oct. 20th, 2014. To use GPS-TSP 1.0 in your web browser, you should install Sun Microsystems Java Runtime Environment (JRE). To get the latest version of the JRE, please visit the http:/ java.com. Page, and choose the proper JRE package based on your operating system and browser. For convenience, you can also download the JRE packages from our website. If your sequences 1000. Please download the local version. The local version is more powerful and has more functions.

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PPS 1.0 - PTMs Peptide Scanner

Met and Ace. Regulators. Last update: Apr. 1st, 2018. Diella, et al., 2004. Diella, et al., 2008. And UniProt ( Boutet, et al., 2007. Have been developed to contain PTM information of proteins. However, these annotations are usually not integrated. Moreover, due to the diversity and heterogeneity of protein names, it's difficult to fully obtain the known PTM information for a given protein, by database searching. In this work, we developed a novel software of PTMs Peptide Scanner (PPS). Taken together, w...

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