Charting and Visualization Tool. Welcome to the KB-Rank search tool. Use text query to identify protein structures and biomedical annotations. Structures and functional annotations are listed according to their estimated relevance to the text query. Example search terms may be protein functions or disease associations. List of datasources providing text fields for this search.
http://protein.tcmedc.org/
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Home : KB-Rank | protein.tcmedc.org Reviews
https://protein.tcmedc.org
Charting and Visualization Tool. Welcome to the KB-Rank search tool. Use text query to identify protein structures and biomedical annotations. Structures and functional annotations are listed according to their estimated relevance to the text query. Example search terms may be protein functions or disease associations. List of datasources providing text fields for this search.
protein.tcmedc.org
Home : KB-Rank
http://protein.tcmedc.org/KB-Rank/description.jsp
Charting and Visualization Tool. Explanation of query methodology. For example queries and ways to proceed when using the tool, please refer to the example queries. If you utilize KB-Rank for your work, please cite the following reference. Julfayev ES, McLaughlin RJ, Tao YP, McLaughlin WA. KB-Rank: efficient protein structure and functional annotation identification via text query. J Struct Funct Genomics. 2012. DOI: 10.1007/s10969-012-9125-7. Genome and metabolic pathway database.
Home : KB-Rank
http://protein.tcmedc.org/KB-Rank/index.jsp
Charting and Visualization Tool. Welcome to the KB-Rank search tool. Use text query to identify protein structures and biomedical annotations. Structures and functional annotations are listed according to their estimated relevance to the text query. Example search terms may be protein functions or disease associations. List of datasources providing text fields for this search.
Home : Charts
http://protein.tcmedc.org/Charts/index.jsp
Functional annotations of residues. Functional annotations of residues. PSI:Biology impact study homepage. Descriptions of data acquisition and functional annotations. Creating a Structural View of Biology - Progress and Charts. PDB) as well as for the set of protein structures determined as a result of PSI:Biology initiatives. A study to assess the impact of protein structures determined under the auspices PSI:Biology by measuring their rates of annotations was completed in May of 2013. This study e...
Home : KB-Rank
http://protein.tcmedc.org/KB-Rank/example.jsp
Charting and Visualization Tool. Example of an informational search with the word hypertension. Illustrative use of the KB-Rank tool where the queried text is hypertension. (A) Summary of the options to display annotation categories for the structures retrieved by initial text match. (B) Display and rank of small molecule associations from DrugBank. (C) Display and rank of annotation categories of enzymatic reactions from EC2PDB. Example of navigational search with the word melanoma.
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Protein Structure 5CYV : SBKB
http://pepcdb.pdb.org/pdbid/5cyv
PSI Structural Biology Knowledgebase. KB-Rank Structure Search Tool. KB-Role Function Prediction Tool. Protein Model Portal (PMP). PDB ID 5CYV Search Results. Please wait while we generate your SBKB results. Structural Biology Knowledgebase ISSN: 1758-1338. Funded by a grant from the National Institute of General Medical Sciences of the National Institutes of Health.
Functional Sleuth : SBKB
http://pepcdb.pdb.org/functionalsleuth
PSI Structural Biology Knowledgebase. KB-Rank Structure Search Tool. KB-Role Function Prediction Tool. Protein Model Portal (PMP). Want to be a Functional Sleuth? Functional Sleuth enables further research for proteins in the. Protein Data Bank archive whose functions are unknown or minimally characterized. Of all SUF PDB IDs, updated weekly. Right-click on any classification below to view the structure gallery and to download the list of PDB IDs an MS Excel-compatible format (CSV). Back to the Main Tree.
citing us : SBKB
http://pepcdb.pdb.org/about/citing-us
PSI Structural Biology Knowledgebase. KB-Rank Structure Search Tool. KB-Role Function Prediction Tool. Protein Model Portal (PMP). The PSI Structural Biology Knowledgebase brings together information from several portals, resources, and links to many biological and structural databases. We thank you for citing our website if you use it in your research. Note:. If you are using information taken from a specific external database, it is best to cite the datas original source. Cormier CY, Mohr SE, Zuo D, Hu...
Protein Structure 5CR9 : SBKB
http://pepcdb.pdb.org/pdbid/5cr9
PSI Structural Biology Knowledgebase. KB-Rank Structure Search Tool. KB-Role Function Prediction Tool. Protein Model Portal (PMP). PDB ID 5CR9 Search Results. Please wait while we generate your SBKB results. Structural Biology Knowledgebase ISSN: 1758-1338. Funded by a grant from the National Institute of General Medical Sciences of the National Institutes of Health.
Resources to probe protein structure-function relationships : SBKB
http://pepcdb.pdb.org/page/show/protein-structure-function-relationships
PSI Structural Biology Knowledgebase. KB-Rank Structure Search Tool. KB-Role Function Prediction Tool. Protein Model Portal (PMP). Resources to probe protein structure-function relationships. The Gene Ontology (GO). Project is a major bioinformatics initiative with the aim of standardizing the representation of gene and gene product attributes across species and databases. Protein Function resources linked within the SBKB. Search Structure by Function. Pathway / Protein-Protein Interactions. Provides det...
terms of use : SBKB
http://pepcdb.pdb.org/about/terms-of-use
PSI Structural Biology Knowledgebase. KB-Rank Structure Search Tool. KB-Role Function Prediction Tool. Protein Model Portal (PMP). What information do we collect? Your privacy is important to us. We strive to do everything we can to protect the privacy of our users. We do not sell or exchange personally identifiable information with any third parties. Structural Biology Knowledgebase ISSN: 1758-1338.
Article Archive : SBKB
http://pepcdb.pdb.org/article/575
PSI Structural Biology Knowledgebase. KB-Rank Structure Search Tool. KB-Role Function Prediction Tool. Protein Model Portal (PMP). Design and Evolution: Unveiling Translocator Proteins. SBKB [doi:10.1038/sbkb.2015.16]. Featured Article - June 2015. Short description: Structural and functional analyses provide new insights on the physiological roles of TSPOs. Cartoon representation of the Bacillus cereus. TSPO dimer in complex with PK-11195, shown in sticks (PDB 4RYI. Reprinted with permission from AAAS.
DNA and Protein Sequence Databases : SBKB
http://pepcdb.pdb.org/page/show/dna-and-protein-sequence-databases
PSI Structural Biology Knowledgebase. KB-Rank Structure Search Tool. KB-Role Function Prediction Tool. Protein Model Portal (PMP). DNA and Protein Sequence Databases. Primary Source - Sequence Data Repositories. The International Nucleotide Sequence Database Collaboration. Sequence Resources linked within the SBKB. Binding / Protein-Protein Interactions. Bull; metabolic pathways. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism. Bull; yeast db. Integ...
Article Archive : SBKB
http://pepcdb.pdb.org/article/archive
PSI Structural Biology Knowledgebase. KB-Rank Structure Search Tool. KB-Role Function Prediction Tool. Protein Model Portal (PMP). View All E-Collection Articles. Articles by NPG provide insights about newly discovered structure-function relationships that help us understand how biological systems work. Featured systems by David Goodsell provide detailed portraits of biological molecules solved through the PSI efforts. Cell Adhesion and Metastasis: DnaJ, Meet JNK. Featured Article - July 2014. In the abs...
about PSI : SBKB
http://pepcdb.pdb.org/about/about-psi
PSI Structural Biology Knowledgebase. KB-Rank Structure Search Tool. KB-Role Function Prediction Tool. Protein Model Portal (PMP). The PSI program officially concluded in 2015, having determined nearly 7000 protein structures, developed 450 new or improved technologies, and wrote over 2200 publications. The impact of this work enabled the greater biological and biomedical communities. PSI:Biology Network Centers and Partners. Policy on Release of Structures. PSI Policies on Community-Nominated Targets.
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Home : KB-Rank
Charting and Visualization Tool. Welcome to the KB-Rank search tool. Use text query to identify protein structures and biomedical annotations. Structures and functional annotations are listed according to their estimated relevance to the text query. Example search terms may be protein functions or disease associations. List of datasources providing text fields for this search.
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