pubannotation.org

PubAnnotation

Share your annotation in alignment with others! Anyone can register his/her text annotations in PubAnnotation. The contributors will retain their full right over their annotation data. PubAnnotation will only help data holders share their data with others. All the annotation data on PubAnnotation are accessable through REST API. It means, you don't need to download whole data sets any more, as your program can directly access the data whenever necessary. The annotations below are rendered by TextAE.

http://www.pubannotation.org/

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PubAnnotation | pubannotation.org Reviews

<META> DESCRIPTION

Share your annotation in alignment with others! Anyone can register his/her text annotations in PubAnnotation. The contributors will retain their full right over their annotation data. PubAnnotation will only help data holders share their data with others. All the annotation data on PubAnnotation are accessable through REST API. It means, you don't need to download whole data sets any more, as your program can directly access the data whenever necessary. The annotations below are rendered by TextAE.

<META> KEYWORDS

1 repository

2 documentation

3 persistent repository

4 alignment

5 programmable api

6 and dereferenceable uris

7 access aligned annotations

8 gene name grounding

9 pubtator

10 semantic annotation

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repository,documentation,persistent repository,alignment,programmable api,and dereferenceable uris,access aligned annotations,gene name grounding,pubtator,semantic annotation,metamap and semrep,coreference annotation,genia medco,dependency parsing,enju

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PubAnnotation | pubannotation.org Reviews

https://pubannotation.org

Share your annotation in alignment with others! Anyone can register his/her text annotations in PubAnnotation. The contributors will retain their full right over their annotation data. PubAnnotation will only help data holders share their data with others. All the annotation data on PubAnnotation are accessable through REST API. It means, you don't need to download whole data sets any more, as your program can directly access the data whenever necessary. The annotations below are rendered by TextAE.

SUBDOMAINS

sparql.pubannotation.org

Pubannotation SPARQL Interface

PREFIX tao: http:/ pubannotation.org/ontology/tao.owl# select distinct? G where { GRAPH? Show the results in [. To list the projects currently indexed in the PubAnnotation SPARQL endpoint. Currently, annotations in each project is stored in one graph. Define a prefix tao. To be used in the query for brevity (line 1). List all the distinct values bound to the variable? Is a graph, (line 3). In which a statement of denotation resides. (line 4). List the documents the CoMAGC. Search for the word binds.

textae.pubannotation.org

TextAE

An embeddable visual editor of text annotation. Looking for a free, open-source, full-featured, browser-based visual editor of text? Try the TextAE editor: http:/ textae.pubannotation.org/editor.html? For example, you can copy the URL in PubAnnotation. Embeddable in HTML documents. Want to embed visual rendering of annotations in HTML documents, like this page. Follow the steps below. Step 1. Add necessary lib's and css's. Step 2. Add div class="textae-editor" where you would like to put annotation.

INTERNAL PAGES

pubannotation.org

1

About

http://www.pubannotation.org/docs/about

Of text annotation, i.e.,. Anyone can create new annotations or upload existing annotations. Features an text alignment. Function, a.k.a, blast, thus. Variation of text can be automatically handled during upload of annotations. Is a REST service. Through which annotations are publicly accessible in various ways, e.g.,. Annotations to the same text can be accessed collectively and selectively, even if they are produced by different groups or annotators. Is an open source project. With its home at GitHub.

2

Intro

http://www.pubannotation.org/docs/intro

With PubAnnotation, it becomes extremely easy. You can simply register your annotations to PubAnnotation. PubAnnotation will find the location of your sentences. If you are lucky enough, you may find other annotations, e.g., of cellular locations, registered by other people. As your annotations also will become accessible to the public (you can control it), the visibility of your resources also will become much improved. We are working on extending the documentation. Your any contribution is very welcome.

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pubannotation.dbcls.jp

PubAnnotation

http://pubannotation.dbcls.jp/projects/DisGeNET

Annotations (3,117,504). Not available for this project. Now it is a Beta service, which means there are still known bugs and incomplete features, and the service is subject to unexpected downtime. The official service will soon begin. Presented by DBCLS (Database Center for Life Science).

pubannotation.dbcls.jp

PubAnnotation

http://pubannotation.dbcls.jp/docs/sourcedb/PMC

Increased interleukin-17 production via a phosphoinositide 3-kinase/Akt and nuclear factor? Resistance to IL-10 inhibition of interferon gamma production and expression of suppressor of cytoki. Regulation ofMycobacterium tuberculosis-Dependent HIV-1 Transcription Reveals a New Role for NFAT5 i. Deficiency of C-C Chemokine Receptor 5 Suppresses Tumor DevelopmentviaInactivation of NF-? Tumor Suppressor WWOX and p53 Alterations and Drug Resistance in Glioblastomas Tumor suppressor p53.

pubannotation.dbcls.jp

PubAnnotation

http://pubannotation.dbcls.jp/projects/craft

Test bed for PubAnnotation query development. Creative Commons Attribution 3.0 Unported License. Not prepared yet for this project. Now it is a Beta service, which means there are still known bugs and incomplete features, and the service is subject to unexpected downtime. The official service will soon begin. Presented by DBCLS (Database Center for Life Science).

pubannotation.dbcls.jp

PubAnnotation

http://pubannotation.dbcls.jp/docs/sourcedb/PubMed

CFTR expression does not influence glycosylation of an epitope-tagged MUC1 mucin in colon carcinoma. Tissue specific expression and chromosomal mapping of a human UDP-N-acetylglucosamine: alpha1,3-d-ma. MUC1 in human and murine mammary carcinoma cells decreases the expression of core 2 β1,6-N-acetylglu. Subunit-specific sulphation of oligosaccharides relating to charge-heterogeneity in porcine lutrophi. Control of metastasis by Asn-linked, beta1-6 branched oligosaccharides in mouse mammary cancer cells.

pubannotation.dbcls.jp

PubAnnotation

http://pubannotation.dbcls.jp/docs/sourcedb/FirstAuthor

シロオビアゲハのベイツ型擬態の分子機構要約シロオビアゲハは一部のメスのみが毒をもつチョウベニモンアゲハに擬態するその擬態型の形質はH遺伝子座に起因することが知られていたシロオビアゲハの全ゲ. 生後まもなく発生するAireに依存性の制御性T細胞が自己免疫寛容を維持する要約 Aireは胸腺髄質上皮細胞に発現し，末梢組織に特異的な自己抗原の発現を誘導することによりT細胞を選択する，免疫学的. アディポネクチン受容体を活性化する低分子化合物AdipoRonの取得要約高脂肪食や運動不足などによる肥満はメタボリックシンドロームや糖尿病などの発症および増悪を促進し，心血管疾患やがんなどのリ. 時計タンパク質は臨界期のタイミングを制御する要約時計タンパク質が発振する概日リズムはさまざまな生理機能を制御しているが，脳における役割は時計中枢である視交叉上核を除き不明な点が多い筆者らは，. 体細胞の初期化の過程において核内受容体型の転写因子ERRによるメタボリックスイッチによりiPS細胞が誘導される要約筆者らは，細胞におけるエネルギー代謝に着目し，iPS細胞の誘導の過程における細.

pubannotation.dbcls.jp

PubAnnotation

http://pubannotation.dbcls.jp/projects

Mariana Neves, Alexander Damaschun, Andreas Kurtz, Ulf Leser. The 295 BEL statements for sample set used for the 2015 BioCreative challenge. A small corpus for the evaluation of dictionaries containing chemical entities. br Publication: http:/ www.scai.fraunhofer.de/fileadmin/images/bio/data mining/paper/kolarik2008.pdf. Id=101371/journal.pone.0065390 target=blank doi:10.1371/journal.pone.0065390 /a. Chih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong Lu. The NCBI disease corpus is fully annotat...

pubannotation.dbcls.jp

PubAnnotation

http://pubannotation.dbcls.jp/projects/bionlp-st-ge-2016-spacy-parsed

Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. This work is licensed under a Creative Commons Attribution 4.0 International License. Not prepared yet for this project. The official service will soon begin. Presented by DBCLS (Database Center for Life Science).

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PubAnnotation

Now it is a Beta service, which means there are still known bugs and incomplete features, and the service is subject to unexpected downtime. The official service will soon begin. Presented by DBCLS (Database Center for Life Science).

pubannotation.org

PubAnnotation

Share your annotation in alignment with others! Anyone can register his/her text annotations in PubAnnotation. The contributors will retain their full right over their annotation data. PubAnnotation will only help data holders share their data with others. All the annotation data on PubAnnotation are accessable through REST API. It means, you don't need to download whole data sets any more, as your program can directly access the data whenever necessary. The annotations below are rendered by TextAE.

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