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SABIO Biochemical Reaction Kinetics DatabaseSABIO-RK is a relational Database for Biochemical Reactions and their Kinetics.
http://sabio.villa-bosch.de/
SABIO-RK is a relational Database for Biochemical Reactions and their Kinetics.
http://sabio.villa-bosch.de/
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SABIO Biochemical Reaction Kinetics Database | sabio.villa-bosch.de Reviews
https://sabio.villa-bosch.de
SABIO-RK is a relational Database for Biochemical Reactions and their Kinetics.
Newsdetail - Sabio-RK
http://sabio.villa-bosch.de/news/newsdetail/42135558
COMBINE and ERASysAPP Tutorial. COMBINE and ERASysAPP Tutorial. Modelling and Simulation of Biological Models. Http:/ co.mbine.org/events/tutorial2014. Sunday, September 14th, 2014 (9:00 - 18:00). To be advised (in the vicinity of the ICSB venue). Model setup using different software tools and systems biology platforms. Using experimental data for setting up quantitative models. Parameter estimation, optimization and model fitting. Simulation, analysis and visualization of biochemical models. Nicolas Le ...
Imprint - Sabio-RK
http://sabio.villa-bosch.de/layouts/content/imprint.gsp
Tel: 49 (6221) 533 201. Fax: 49 (6221) 533 199. E-Mail: sabiork (at) h-its.org.
Publications - Sabio-RK
http://sabio.villa-bosch.de/layouts/content/publications.gsp
Please use the following reference to cite SABIO-RK:. SABIO-RK - database for biochemical reaction kinetics. Ulrike Wittig; Renate Kania; Martin Golebiewski; Maja Rey; Lei Shi; Lenneke Jong;. Enkhjargal Algaa; Andreas Weidemann; Heidrun Sauer-Danzwith; Saqib Mir; Olga Krebs; Meik Bittkowski; Elina Wetsch; Isabel Rojas; Wolfgang MÃ ller. Nucleic Acids Research 2012;40(Database issue):D790-6. Http:/ nar.oxfordjournals.org/content/40/D1/D790. SABIO-RK: integration and curation of reaction kinetics data.
Statistic - Sabio-RK
http://sabio.villa-bosch.de/layouts/content/statistic.gsp
Links - Sabio-RK
http://sabio.villa-bosch.de/layouts/content/links.gsp
VCell - The Virtual Cell. ChEBI - Chemical Entities of Biological Interest. KEGG - Kyoto Encyclopedia of Genes and Genomes. BRENDA - Enzyme Database. ExPASy - Enzyme nomenclature database. ExplorEnz - Enzyme Database. Pubchem - Substance, Compound, and BioAssay. Pubmed - Biomedical Literature Database. IntEnz - Integrated relational Enzyme Database. Reactome - Pathway Database. UniProt - Protein Knowledgebase. SBML - Systems Biology Markup Language. BioPAX - Biological Pathway Exchange.
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Databases - Molecular Simulation Modeling
http://www.mosim.org/databases.html
Http:/ www.ebi.ac.uk/biomodels-main/publmodels. Free kinetic model library. Le Novère, N., B. Bornstein, et al. (2006). “BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.” Nucleic Acids Research. Http:/ bigg.ucsd.edu/. Free COBRA models and tools. . Biochemical Reaction Kinetics Database http:/ sabio.villa-bosch.de/. Proudly powered by Weebly.
CellDesigner.org
http://www.celldesigner.org/links.html
The Systems Biology Institute. Kitano Symbiotic Systems Project. A portal site for Systems Biology. The Systems Biology Institute. JST ERATO Kitano Symbiotic Systems Project. Mizuho Information and Research Institute. Mitsui Knowledge Industry Co. Ltd. Dept of Biosience and Informatics, Keio University. Okinawa Institute of Science ance Technology. Pathways database using CellDesigner Lite. Community Pathway Curation web service. IApplication for Pathway browsing on iPhone/iPad.
Features - BioUML platform
http://wiki.biouml.org/index.php/Features
The main BioUML features (shared by all editions) are listed below. The following systems biology standards are applied in BioUML:. Systems Biology Markup Language. BioUML supports SBML Level 1 version 1-2; Level 2 versions 1-4; Level 3 version 1. BioUML is the only simulator that has passed all the tests from the SBML test suite version 2.0 (test details). Systems Biology Graphic Notation. BioUML supports Process Diagrams as they are defined by SBGN version 1.0. BioUML supoorts data in PSI-MI format.
BioModels Database (Caltech mirror)
http://biomodels.caltech.edu/path2models
Path2Models is a branch of BioModels Database dedicated to hosting models automatically generated from pathway resources, such as KEGG. Models from this branch are classified in 3 distinct categories:. Whole genome metabolism models. One can also browse those models by organism:. List of all organisms. The following search will only look for models coming from the path2models project:. Help about the search. Will be used to combine them. Double quotes ( ". The colon character ( :. Archives of all models.
BioModels Database (Caltech mirror)
http://biomodels.caltech.edu/static-pages.do?page=release_20140916
Hinxton, Tuesday 16. We are proud to announce the 28. Release of BioModels Database. Which introduces new models as well as additional features and an easier access thanks to an updated homepage. BioModels Database now publicly provides access to 144,282 models. This corresponds to 1,212 models published in the literature and 143,070 models automatically generated from pathway resources. Within this complete set, 548 models have been manually curated. Those models are fully MIRIAM. Terms usually provided...
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/path2models
Path2Models is a branch of BioModels Database dedicated to hosting models automatically generated from pathway resources, such as KEGG. Models from this branch are classified in 3 distinct categories:. Whole genome metabolism models. One can also browse those models by organism:. List of all organisms. The following search will only look for models coming from the path2models project:. Help about the search. Will be used to combine them. Double quotes ( ". The colon character ( :. Archives of all models.
Databases | LCSB
http://lcsb.epfl.ch/page-52852-en.html
Jump to search field. Laboratory of Computational Systems Biotechnology. Tools for System Biology. KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG (Kyoto Encyclopedia of Genes and Genomes) is a bioinformatics resource for linking genomes to life and the environment. Encyclopedia of Escherichia coli K-12 Genes and Metabolism. Is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc. Project performs literature-based curation. Welcome to the ExPASy. Enzyme Database - BRENDA.
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SABIO | South African Bee Industry Organisation
South African Bee Industry Organisation. Skip to primary content. Skip to secondary content. Membership & Registration. Honeybees of South Africa. Publications & Reports. The South African Bee Industry Organisation. The SOUTH AFRICAN BEE INDUSTRY ORGANISATION (. To represent and promote the interests of all persons involved in the beekeeping industry in South Africa in order to establish, support and develop an economically viable and sustainable apicultural sector. The South African Beekeeping Industry.
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SABIO Biochemical Reaction Kinetics Database
SABIO-RK is a curated database that contains information about biochemical reactions,. Their kinetic rate equations with parameters and experimental conditions. SABIO-RK links to MetaCrop. Enzymes in SABIO-RK are now linked to corresponding plant data in the MetaCrop database. more. COMBINE and ERASysAPP Tutorial. SABIO-RK at the tutorial "Modelling and Simulation of Biological Models" on Sunday, September 14th, 2014 at the ICSB in Melbourne more.
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