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Genes that collaborate in a shared function often require simultaneous expression, also called co-expression. By studying how expression patterns vary in concert across hundreds, or even thousands, of expression microarray experiments, we aim to glean new information about gene function in Arabidopsis and other species. To facilitate our studies of co-expression, we developed an analysis tool, CressExpress for ourselves and others to use. You can run the tool here by clicking the Run the Tool link.

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Genes that collaborate in a shared function often require simultaneous expression, also called co-expression. By studying how expression patterns vary in concert across hundreds, or even thousands, of expression microarray experiments, we aim to glean new information about gene function in Arabidopsis and other species. To facilitate our studies of co-expression, we developed an analysis tool, CressExpress for ourselves and others to use. You can run the tool here by clicking the Run the Tool link.

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CressExpress Home Page | test.cressexpress.org Reviews

https://test.cressexpress.org

Genes that collaborate in a shared function often require simultaneous expression, also called co-expression. By studying how expression patterns vary in concert across hundreds, or even thousands, of expression microarray experiments, we aim to glean new information about gene function in Arabidopsis and other species. To facilitate our studies of co-expression, we developed an analysis tool, CressExpress for ourselves and others to use. You can run the tool here by clicking the Run the Tool link.

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test.cressexpress.org

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CressExpress Web Services

http://test.cressexpress.org/webservice.xhtml

We provide access to "raw" expression values for ATH1 microarray data in our database via a simple, easy-to-use, RESTful Web service. To access the data via this Web service, you just need to know how to formulate URL queries. Probeset Id list comma separated (e.g. pss=251784 at,245213 at,259838 at). Currently the only available release is 4.0. Optional Parameter with accepted Values: json,text. Default is text if not provided. Http:/ test.cressexpress.org/web/webservice/expressionData?

2

CressExpress Credits Page

http://test.cressexpress.org/credits.xhtml

CressExpress Contributors, Loraine Lab. David Norris, CressExpress 2.0 Architect, Programmer, System Administrator. Nikhil Dahake, CressExpress 2.0 Programmer. Hiral Vora, CressExpress 1.0 Programming. Steven Blanchard, CressExpress 1.0 Programming and Systems Design. Ann Loraine, Programming and Project Management. CressExpress Contributors - SSG. Vinodh Srinivasan, Programming. Grier Page, Statistics and Project Management, RTI. Mikako Kawai, Web Design, UAB. Tapan Mehta, Programming, UAB.

3

CressExpress Feedback Page

http://test.cressexpress.org/feedback.xhtml

We welcome your feedback, comments, and questions. To report an error or ask a question about specific jobs, contact David Norris at dcnorris. For questions on tool operation or large-scale data access, please contact Ann Loraine at aloraine.

4

CressExpress About Page

http://test.cressexpress.org/about.xhtml

Where do the data come from? CressExpress includes data from all ATH1 (GPL198) microarrays that had CEL files deposited in the Gene Expression Omnibus at the time we collected the data. The data shown in Release 4.0 were harvested in fall of 2013. After obtaining the CEL files, we processed them using tools from the BioConductor suite. CEL files were processed using RMA, which included probe level quantile normalization and log (base 2) transformation. How do you measure co-expression? PLC identifies gen...

5

CressExpress Home Page

http://test.cressexpress.org/home.xhtml

Genes that collaborate in a shared function often require simultaneous expression, also called co-expression. By studying how expression patterns vary in concert across hundreds, or even thousands, of expression microarray experiments, we aim to glean new information about gene function in Arabidopsis and other species. To facilitate our studies of co-expression, we developed an analysis tool, CressExpress for ourselves and others to use. You can run the tool here by clicking the Run the Tool link.

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CressExpress Home Page

Genes that collaborate in a shared function often require simultaneous expression, also called co-expression. By studying how expression patterns vary in concert across hundreds, or even thousands, of expression microarray experiments, we aim to glean new information about gene function in Arabidopsis and other species. To facilitate our studies of co-expression, we developed an analysis tool, CressExpress for ourselves and others to use. You can run the tool here by clicking the Run the Tool link.

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