The CoGe Comparative Genomics Platform. A software suite of interlinked and interconnected web-based tools for easily visualizing, comparing, and understanding the evolution, struture and dynamics of genomes.
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CoGe: Comparative Genomics | genomevolution.org Reviews
https://genomevolution.org
The CoGe Comparative Genomics Platform. A software suite of interlinked and interconnected web-based tools for easily visualizing, comparing, and understanding the evolution, struture and dynamics of genomes.
genomevolution.org
CoGe: My Data
https://www.genomevolution.org/coge/User.pl
Would you like to log out of all CyVerse applications? Log out of CoGe only. Log out of all CyVerse services. Contact or Cite Us. This page requires that you be logged-in. If you have a CyVerse account you can login here. Otherwise, please see these instructions. For getting an account. Questions, problems, suggestions?
System Support - CoGepedia
https://www.genomevolution.org/wiki/index.php/System_Support
CoGe System Support, 2013. Contact us at coge.genome@gmail.com! CoGe is a comparative genomics system funded by Gordon and Betty Moore Foundation and is provided as a public research toolbox. Use is without charge. CoGe is a collaboration with the Lyons Lab at the University of Arizona, the Freeling Lab at UC Berkeley, and the iPlant Collaborative. NSF has supported CoGe in the past. Additional tools and data are provided by volunteer contributors. Please read our data usage policy. The CoGe team underst...
CoGepedia
https://www.genomevolution.org/wiki/index.php
Welcome to CoGepedia, CoGe's Official Wiki. Here you can find information pertaining to the CoGe Comparative Genomics suite of web-tools, including:. How to get a CoGe account. How to add a private genome to CoGe. Background on comparative genomics terms and science. What is needed to run CoGe? Funding for CoGe is provided by:. Retrieved from " https:/ genomevolution.org/wiki/index.php? Sites Linked to CoGe. Sites Linked from CoGe. This page was last modified on 16 April 2015, at 12:18.
CoGepedia
https://www.genomevolution.org/wiki
Welcome to CoGepedia, CoGe's Official Wiki. Here you can find information pertaining to the CoGe Comparative Genomics suite of web-tools, including:. How to get a CoGe account. How to add a private genome to CoGe. Background on comparative genomics terms and science. What is needed to run CoGe? Funding for CoGe is provided by:. Retrieved from " https:/ genomevolution.org/wiki/index.php? Sites Linked to CoGe. Sites Linked from CoGe. This page was last modified on 16 April 2015, at 12:18.
FAQs - CoGepedia
https://www.genomevolution.org/wiki/index.php/FAQs
Commonly asked questions about CoGe. Why call it CoGe? Why make another comparative genomics system? How is CoGe designed and put together? What is needed to run CoGe? What is CoGe's sequence analysis workflow or pipeline? What web browser do you recommend and how should it be configured? What programming languages/software are used in CoGe? Can I add a genome? What is CoGe's data release policy? What is CoGe's Graphical Genomic Visualization Library? Can CoGe be installed locally. How can I link to CoGe?
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What we Do - The Laboratory of Eric Lyons
http://www.lyonslab.net/what-we-do.html
We are involved in many projects. CoGe: Comparative Genomics Engine. CyVerse: Transforming Science through Data-Driven Discovery. Structural, functional, and evolutionary analysis of long non-coding RNAs in control of stress response and the epigenome in diverse plant species. We do fun things on the side. Genomic Data Visualization with Virtual Reality. Raspberry Pi and Arduino's for Biologists. And sometimes, pinball. We are always open to new ideas.
Publications - Beilstein Lab
http://www.telomereevolution.org/publications.html
To view Mark Beilstein on Google Scholar, click here. The Argonaute-binding platform of NRPE1 evolves through modulation of intrinsically disordered repeats. 2016. Trujillo, J. T., Beilstein, M. A. Mosher, R. A. New Phytologist. A genomic analysis of factors driving lincRNA diversification: lessons from plants. 2016. Ancient Origin and Recent Innovations of RNA Polymerase IV and V. 2015. Mosher, R. Molecular Biology and Evolution. Daldal, F., Deal, Gregory, B. D. Molecular Cell. 57:376-388. - PDF. Extend...
Former Lab Members - Beilstein Lab
http://www.telomereevolution.org/former-lab-members.html
The RADIO
http://mollycat.ucdavis.edu/wordpress/index.php
Rothlab Aggregator of Data, Ideas and Opinions — A Forum for Members and Friends of the John Roth Laboratory. Illumina Data Reduction Primer. March 13th, 2013. Are some notes on how I analyze Illumina data. I would appreciate any comments on how to improve, supplement or extend these methods. The Amazing History of DR397. March 29th, 2012. Drew Reams studies unselected duplication formation, and recently found an eel in the DNA! The extensive secondary structures at such. TID joints are toxic and rarely ...
Plant Regulome - About: Community
http://www.plantregulome.org/community
We are begining the processes of integrating the plant regulome data with other community genomics projects and consortia such as iPlant, Araport, Comparative Genomics Project (CoGe), and EPIC-CoGe (Epigenomics of Plants International Consortium). Epigenomics of Plants International Consortium (browser). We will gladly engage with other community resources, for questions please contact help@plantregulome.org.
Powered by CyVerse | CyVerse
http://www.cyverse.org/powered-by-cyverse
BisQue Image Analysis Environment. About Powered by CyVerse. Third-party projects can leverage our cyberinfrastructure to provide services to their users, including:. Authentication system: Use secure single sign-on between your application and all CyVerse services. Data Store: Store, share and distribute large amounts of data. High-performance framework: Execute analyses on High Performance Computing resources. Becoming Powered by CyVerse. Using the Powered by CyVerse logo. Uses CyVerse's centralized au...
Michael McConaughy - Beilstein Lab
http://www.telomereevolution.org/michael-mcconaughy.html
Michael McConaughy - Undergraduate Researcher. I am an undergraduate researcher at the University of Arizona in the Beilstein Lab. I am majoring in Biology with an emphasis in biomedical sciences. I’ve been with the Beilstein Lab since early 2014 researching genetic functions and interactions in the plant family Brassicaceae; specifically, the evolution of telomerase RNA.
Evan Forsythe - Beilstein Lab
http://www.telomereevolution.org/evan-forsythe.html
Evan Forsythe - Graduate Student. BA Biology, Saint John’s University, 2011. Although much of my work involves tracking complicated gene family evolution within a fairly well-resolved organismal history, I also use genome-wide phylogenetic signal (phylogenomics) to resolve organismal histories that are heavily complicated by population-level processes such as deep coalescence and reticulate evolution. Email: esforsythe@email.arizona.edu.
Ari Meldrum - Beilstein Lab
http://www.telomereevolution.org/ari-meldrum.html
Ari Meldrum - Undergraduate Researcher. I am an undergraduate researcher who joined the lab in January 2014. I am a Molecular and Cellular Biology / Russian double major. My project focuses on the evolution of the different components of telomerase in the family Brassicaceae, specifically the telomerase RNA component, or TER. The long-term goals of this project are to sequence and locate the TER for 5 different species of Brassicaceae.
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genomevillage.com
Introduction to Circos, Features and Uses // CIRCOS Circular Genome Data Visualization
Circos at the EMBO NGS workshop. In Tunis, Sept 15–25. Circos is back for 4rd year at 2014 Bioinformatics and Comparative Genome Analysis. Course by the Pasteur Institute—Athens, May 7. 20 imperatives of information design. Mdash; BioVis 2012. Circos manages the connectome of 50 brains. Mdash;NeuroImage 28 Jan. Interested in network visualization? See my hive plot. Safely learn about the plague, ebola and marburg at the deadly genomes. New England Journal of Medicine animation. The image shows the illega...
Introduction to Circos, Features and Uses // CIRCOS Circular Genome Data Visualization
Circos at the EMBO NGS workshop. In Tunis, Sept 15–25. Circos is back for 4rd year at 2014 Bioinformatics and Comparative Genome Analysis. Course by the Pasteur Institute—Athens, May 7. 20 imperatives of information design. Mdash; BioVis 2012. Circos manages the connectome of 50 brains. Mdash;NeuroImage 28 Jan. Interested in network visualization? See my hive plot. Safely learn about the plague, ebola and marburg at the deadly genomes. New England Journal of Medicine animation. The image shows the illega...
Introduction to Circos, Features and Uses // CIRCOS Circular Genome Data Visualization
Circos at the EMBO NGS workshop. In Tunis, Sept 15–25. Circos is back for 4rd year at 2014 Bioinformatics and Comparative Genome Analysis. Course by the Pasteur Institute—Athens, May 7. 20 imperatives of information design. Mdash; BioVis 2012. Circos manages the connectome of 50 brains. Mdash;NeuroImage 28 Jan. Interested in network visualization? See my hive plot. Safely learn about the plague, ebola and marburg at the deadly genomes. New England Journal of Medicine animation. The image shows the illega...
CoGe: Comparative Genomics
CoGe is undergoing scheduled system maintenance. Sorry for the inconvenience, we hope to be back up and running soon!
My Site
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Subhabrata's Weblog | Commentaries, opinions and rants of Mr. Subhabrata Pal
December 17, 2009. Why is no one talking about the population problem in the climate debates? Filed under: Current Affairs. 8212; Tags: Climate. 8212; genomewarrior @ 10:29 pm. Figure: Global population from 10,000 BC to 2000 AD (Source: Wikipedia). Figure: Global population distribution (Source: Wikipedia). Edit (December 21st 2009): Just finished reading David J.C. MacKay’s book “ Sustainable Energy – without the hot air. There are other points too that are evident in the book, namely, the climate prob...
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Genome Web
Craig Venter and ExxonMobil join hands in biofuel venture. On Thursday, July 16, 2009. Why is that I am writing about it here? Obviously biofuel is my interest, but this is not the right place to talk about it. The reason for mentioning about it here is due to involvement of one of the biggest institutes in human genomics research, The Craig Venter's company, Synthetic Genomics (SGI), is helping ExxonMobil in developing algae based biofuels. In this $600 million contract,SGI. On Tuesday, July 14, 2009.
Genetics, Genomics & Molecular Diagnostics News
Skip to main content. Proteomics and Protein Research. Biomarker Discovery and Validation. Drug Discovery and Development. Neurological and Psychological Disease. People in the News. Liquid Biopsy Startup Freenome Using Recently Raised Funds to Show Clinical Validity, Utility. Preventive Genome Screening Hot Topic at ACMG Meeting. At the ACMG annual conference in Phoenix last week, several labs and companies discussed their efforts in healthy genome sequencing. The single-cell VDJ profiling kit is the fi...
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