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John Baumgartner's Research(by John Baumgartner)
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John Baumgartner's Research | johnbaumgartner.wordpress.com Reviews
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(by John Baumgartner)
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The end of the line for error bars in R | John Baumgartner's Research
https://johnbaumgartner.wordpress.com/2013/11/06/line-endings
John Baumgartner's Research. Skip to primary content. The end of the line for error bars in R. November 6, 2013. When plotting in R, I often use the. Function to add lines representing confidence intervals. This is a very simple way to plot lines connecting pairs of x,y coordinates. Recently I discovered that by default, segments are styled with rounded line caps, which add to their length. This means, of course, that confidence intervals are slightly wider than intended. A secondary benefit is that line...
R code | John Baumgartner's Research
https://johnbaumgartner.wordpress.com/code
John Baumgartner's Research. Skip to primary content. Package: jagstools ( download from github. Filter the printed summary of an rjags object to display only nodes whose names match a given string (or which match a regex pattern). Sort the printed summary of an rjags object by Rhat to reveal the least converged parameters. Function: gdal polygonizeR ( download function. Convert a Raster object or GDAL-supported raster file. To a polygon shapefile (see this post. Based on code provided by Lyndon Estes.
Publications | John Baumgartner's Research
https://johnbaumgartner.wordpress.com/publications
John Baumgartner's Research. Skip to primary content. Catford, J.A., Baumgartner, J.B. Vesk, P.A., White, M., Buckley, Y.M. and McCarthy, M.A. (2016) Disentangling the four demographic dimensions of species invasiveness. Penman, T.D., Keith, D.A., Elith, J., Mahony, M.J., Tingley, R., Baumgartner, J.B. Regan, T.J. (2015) Interactive effects of climate change and fire on metapopulation viability of a forest-dependent frog in south-eastern Australia. Guisan, A., Tingley, R., Baumgartner, J.B. Overlap betwe...
Getting rasters into shape from R | John Baumgartner's Research
https://johnbaumgartner.wordpress.com/2012/07/26/getting-rasters-into-shape-from-r
John Baumgartner's Research. Skip to primary content. Getting rasters into shape from R. July 26, 2012. Update: Windows people should use the modified version of the function provided by Francisco Rodriguez-Sanchez. Mentioned in this comment. Which is available as a Gist here. Package has a function that can do this (. But it seems to take a very, very long time and chew up all system resources (at least on my not particularly souped up X200 laptop). Utility, gdal polygonize.py, directly from R using.
John Baumgartner | John Baumgartner's Research
https://johnbaumgartner.wordpress.com/author/johnbaumgartner
John Baumgartner's Research. Skip to primary content. Skip to secondary content. Author Archives: John Baumgartner. John is a PhD candidate with the Quantitative and Applied Ecology Group at The University of Melbourne, Australia. His research currently involves estimating extinction risks through integration of models of habitat suitability and population dynamics. The end of the line for error bars in R. November 6, 2013. When plotting in R, I often use the. Plotnew() par(mar=c(1, 4, 1, 1) plot.win...
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Teaching Experience | Dan Gwinn
https://dgwinn.wordpress.com/teaching-experience
Quantitative Tools for Ecological Problems. 2013 Methods for estimating fisheries exploitation: laboratory for University of Florida Population Dynamics course (UF. FAS 6337). 2012 Stochastic simulation for design and evaluation of monitoring programs: One-day workshop at Department of Primary Industries, Marine and Freshwater Fisheries Research Institute in Victoria, Australia. 2011 Linear models and multi-model inference: laboratory for University of Florida Population Dynamics course (UF, FAS 6337).
rtingley | Reid Tingley
https://rtingley.wordpress.com/author/rtingley
Extinction and invasion ecology of amphibians and reptiles. Skip to primary content. Skip to secondary content. I am a Research Fellow working in the ARC Centre of Excellence for Environmental Decisions (CEED) at the University of Melbourne. Toward more effective use of SDMs in conservation decision making. November 3, 2013. How could we most effectively develop SDMs to support these decisions, and start to bridge the gap between academics and managers? In a recent paper in Ecology Letters. Your research...
Toward more effective use of SDMs in conservation decision making | Reid Tingley
https://rtingley.wordpress.com/2013/11/03/toward-more-effective-use-of-sdms-in-conservation-decision-making
Extinction and invasion ecology of amphibians and reptiles. Skip to primary content. Toward more effective use of SDMs in conservation decision making. November 3, 2013. How could we most effectively develop SDMs to support these decisions, and start to bridge the gap between academics and managers? In a recent paper in Ecology Letters. Several authors from the ARC Centre of Excellence for Environmental Decisions. You can download our paper free of charge here. Relative likelihood of occurrence of an Aus...
Workshops
http://www.sccs-aus.org/past-conferences/sccs-australia-2013/2013-workshops-and-field-trips/workshops-2.html
Venue and Host Institution. Venue and Host info. Workshops and Field Trips. Workshops and Field Trips. Introduction to Geographic Information Systems (GIS):. This half day workshop introduced the basic concepts in GIS and its potential applications. Instructor: Dr. Hawthorne Beyer. From the Environmental Decisions Group. This full day workshop provided participants with basic knowledge and skills necessary to use Marxan for conservation planning. From the Environmental Decisions Group. From the Environme...
Workshops & Field Trips
http://www.sccs-aus.org/past-conferences/sccs-australia-2013/2013-workshops-and-field-trips.html
Venue and Host Institution. Venue and Host info. Workshops and Field Trips. Workshops and Field Trips. Introduction to Geographic Information Systems (GIS):. This half day workshop introduced the basic concepts in GIS and its potential applications. Instructor: Dr. Hawthorne Beyer. From the Environmental Decisions Group. This full day workshop provided participants with basic knowledge and skills necessary to use Marxan for conservation planning. From the Environmental Decisions Group. From the Environme...
Don’t forget the brackets | JAGS News
https://martynplummer.wordpress.com/2015/08/05/dont-forget-the-brackets
Statistical Computing Bayesian Modelling. Skip to primary content. Don’t forget the brackets. August 5, 2015. I have been helping a user who found some discrepancies between the results from JAGS and OpenBUGS. Such problems always concern me and I give them high priority. In this case, there were several differences in parameterizatino between the JAGS and OpenBUGS models. Among them, the JAGS model included this line:. Prec[g] - 1.0 / sigma[g]*sigma[g]. Prec[g] - 1.0. The standard-deviation-to-precision...
bathing trunks | snappyhap
https://snappyhap.wordpress.com/2013/01/17/bathing-trunks
Sometimes I take photos and put them here. Skip to primary content. January 17, 2013. Strapping young lad aboard robust sea-going vessel off Kai Bae, Koh Chang. Up periscope. This entry was posted in nature. 2 thoughts on “ bathing trunks. January 17, 2013 at 4:51 PM. Made me smile. Elephants are the best. January 17, 2013 at 6:33 PM. Your story checks out, elephants are indeed the best. How awesome is picking up food with your nose? Evolution at its finest.🙂. Leave a Reply Cancel reply.
Students | Tracey Regan's Research
https://traceyregan.wordpress.com/students
Tracey Regan's Research. 2014-), postdoctoral research associate on ARC Linkage grant ‘Red listing ecosystems testing the new global standard for conservation‘. 2012-), PhD student, Conservation of biodiversity in fire-prone environments. 2010-), PhD student, Managing extinction risk under climate change. 2014-), MSc, Conservation planning on the Tiwi Islands. Karen McGregor (2012-2013), MSc, Uncertainty in climate change predictions of species’ distributions. Leave a Reply Cancel reply.
amywhiteheadresearch.wordpress.com
Copying files with R | Amy Whitehead's Research
https://amywhiteheadresearch.wordpress.com/2014/11/12/copying-files-with-r
Amy Whitehead's Research. The ecological musings of a conservation biologist. Copying files with R. Following on from my recent experience with deleting files using R. I found myself needing to copy a large number of raster files from a folder on my computer to a USB drive so that I could post them to a colleague (yes, snail mail – how old and antiquated! R has a nice set of file manipulation. Commands in the base package that make it really easy to find out if a file exists (. Or delete them (. Identify...
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John Baumann’s Blog
John Baumann’s Blog. Results, Results, Results….Making it happen from the In Side-Out. JUST KEEP ON KEEPING ON . . JUST KEEP ON KEEPING ON . . Muhammad Ali, Pope John Paul II, John Baumann, Michael J. Fox . . . Wait a minute, back up a name. What does I have in common with this group of famous people? That is where I am- enjoying life, enjoying work. Oh yeah, did I mention that I am a Parkinsonian and I guess proud of it. LearnSuccessToday.com LearnNegotiationToday.com. Cornell Law School, Class of 1986.
John Baumann
August 27 ,2015. Rockin' Rodeo (W/ Roger Creager). August 28 ,2015. Chelsea Street Pub (Headliner). August 29 ,2015. Ben Wheeler, TX. September 04 ,2015. John T. Floore Country Store (w/ JB and The Moonshine Band). September 05 ,2015. Crystal Beach, TX. September 11 ,2015. September 12 ,2015. September 19 ,2015. San Angelo, TX. October 02 ,2015. Hurricane Harry's (w/ Wade Bowen). College Station, TX. October 10 ,2015. October 17 ,2015. Heart O' Texas Fair and Rodeo. October 24 ,2015. July 17 ,2015.
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John Baumgartner's Research
John Baumgartner's Research. Skip to primary content. Skip to secondary content. The end of the line for error bars in R. November 6, 2013. When plotting in R, I often use the. Function to add lines representing confidence intervals. This is a very simple way to plot lines connecting pairs of x,y coordinates. Recently I discovered that by default, segments are styled with rounded line caps, which add to their length. This means, of course, that confidence intervals are slightly wider than intended. A sec...
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John Bauters for Emeryville City Council | John Bauters 2016
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