physiomeproject.org

Physiome Project: Home

The IUPS Physiome Project is a worldwide effort to define the physiome through the development of databases and models which will facilitate the understanding of the integrative function of cells, organs, and organisms.". A brief history of the Physiome Project. From molecules to humankind. The Virtual Physiological Human. Developing a modelling framework. Urinary system and kidney. From molecules to humankind. Developing a modelling framework. The Virtual Physiological Human.

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The IUPS Physiome Project is a worldwide effort to define the physiome through the development of databases and models which will facilitate the understanding of the integrative function of cells, organs, and organisms.. A brief history of the Physiome Project. From molecules to humankind. The Virtual Physiological Human. Developing a modelling framework. Urinary system and kidney. From molecules to humankind. Developing a modelling framework. The Virtual Physiological Human.

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1 open source policy

2 publication policy

3 sponsorship

4 meetings

5 research

6 cardiovascular system

7 respiratory system

8 musculo skeletal system

9 integumentary system

10 digestive system

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Physiome Project: Home | physiomeproject.org Reviews

https://physiomeproject.org

The IUPS Physiome Project is a worldwide effort to define the physiome through the development of databases and models which will facilitate the understanding of the integrative function of cells, organs, and organisms.". A brief history of the Physiome Project. From molecules to humankind. The Virtual Physiological Human. Developing a modelling framework. Urinary system and kidney. From molecules to humankind. Developing a modelling framework. The Virtual Physiological Human.

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models.physiomeproject.org

Physiome Repository — Physiome Model Repository

The list of processed model exposures (formats: 100 per page. Which are models that have documentation pages generated from the metadata they contain. Alternatively, you may start browsing via the categories that are listed below:. Comments about the functional status or curation status of the models within this repository are the opinions of the CellML Model Repository curators. We do our best to accurately represent these models, but please contact us. CellML models by category.

tracker.physiomeproject.org

Physiome Tracker Main Page

Submit question about CellML. Submit question about Zinc. Submit CellML repository issue. Physiome Tracker Main Page. This is the Physiome Tracker site. Submit a question, comment, problem report or suggestion about:. A web service or software program. List all open tracker items about:. CellML Repository Models / Curation Issues. FieldML specification and API. PMR (Physiome Model Repository) Software. Summary reports and charts. Open a new Physiome Tracker account. Install the Quick Search plugin.

INTERNAL PAGES

physiomeproject.org

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Physiome Project: A brief history of the Physiome Project

http://physiomeproject.org/about/a-brief-history

A brief history of the Physiome Project. From molecules to humankind. The Virtual Physiological Human. Developing a modelling framework. Urinary system and kidney. About the IUPS Physiome Project. A satellite workshop ‘On designing the Physiome Project’, organised and chaired by Professor Jim Bassingthwaighte, the Chair of the IUPS ‘Commission on Bioengineering in Physiology’, was held in Petrodvoretz, Russia, following the 33rd World Congress in St Petersburg in 1997. About the Physiome Project. Develop...

2

Physiome Project: From molecules to humankind

http://physiomeproject.org/about/molecules-to-humankind

A brief history of the Physiome Project. From molecules to humankind. The Virtual Physiological Human. Developing a modelling framework. Urinary system and kidney. About the IUPS Physiome Project. Piecing together the complete virtual physiological human. Software, model repositories and collaboration. The Auckland Bioengineering Institute. About the Physiome Project. A brief history of the Physiome Project. From molecules to humankind. The Virtual Physiological Human. Developing a modelling framework.

3

Physiome Project: Home

http://physiomeproject.org/about

The IUPS Physiome Project is a worldwide effort to define the physiome through the development of databases and models which will facilitate the understanding of the integrative function of cells, organs, and organisms.". A brief history of the Physiome Project. From molecules to humankind. The Virtual Physiological Human. Developing a modelling framework. Urinary system and kidney.

4

Physiome Project: Developing a modelling framework

http://physiomeproject.org/about/modelling-framework

A brief history of the Physiome Project. From molecules to humankind. The Virtual Physiological Human. Developing a modelling framework. Urinary system and kidney. About the IUPS Physiome Project. Models can be defined at various levels of abstraction:. The conceptual level (the domain of a biologist) - words are used to describe the model;. The solution level (the domain of the numerical analyst) involves the algorithms for solving the parameterised equations on the parameterised domains. We propose tha...

5

Physiome Project: Publication policy

http://physiomeproject.org/about/publication-policy

A brief history of the Physiome Project. From molecules to humankind. The Virtual Physiological Human. Developing a modelling framework. Urinary system and kidney. About the IUPS Physiome Project. All data and models will be placed in a public domain web-accessible database following publication. The source of the data and models will always be acknowledged. About the Physiome Project. A brief history of the Physiome Project. From molecules to humankind. The Virtual Physiological Human.

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models.physiomeproject.org

Endocrine — Physiome Model Repository

https://models.physiomeproject.org/endocrine

Bertram, Satin, Pedersen, Luciani, Sherman, 2007. Intra- and inter-islet synchronization of metabolically driven insulin secretion. Bingzheng, Zhenye, Liansong, 1990. A mathematical model of the regulation system of the secretion of glucocorticoids. Brown, Choe, Shanahan, Czeisler, 1997. A mathematical model of diurnal variations in human plasma melatonin levels. Cartwright, Husain, 1986. A model for the control of testosterone secretion. Dempsher, Gann, Phair, 1984. Egli, Bertram, Sellix, Freeman, 2004.

models.physiomeproject.org

Calcium Dynamics — Physiome Model Repository

https://models.physiomeproject.org/calcium_dynamics

Albrecht, Colegrove, Friel, 2002. Differential Regulation of ER Ca2 Uptake and Release Rates Accounts for Multiple Modes of Ca2 -induced Ca2 Release. Albrecht, Colegrove, Hongpaisan, Pivovarova, Andrews, Friel, 2001. Multiple Modes of Calcium-induced Calcium Release in Sympathetic Neurons I: Attenuation of Endoplasmic Reticulum Ca2 Accumulation at Low [Ca2 ]i during Weak Depolarisation. Baylor, Hollingworth, Chandler, 2002. Baylor, Hollingworth, Chandler, 2002. Baylor, Hollingworth, Chandler, 2002. The P...

cellml.org

CellML editor election results 2015 — CellML

https://www.cellml.org/about/news/2015-editor-election-results

CellML editor election results 2015. CellML editor election results 2015. Plot of the 2015 CellML editor election results. We recently held an election for two new editors to replace Poul. Nielsen and David Nickerson on the CellML editorial board following the. Conclusion of their terms. Their were four nominees standing for election and a total of 22 valid. Votes cast in the election. The confirmed results are:. Jonathan Cooper - 16 votes. Alan Garny - 15 votes. Vijay Rajagopal - 3 votes. Announcing the...

models.physiomeproject.org

Mechanical Constitutive Laws — Physiome Model Repository

https://models.physiomeproject.org/mechanical_constitutive_laws

Simplified models for gas exchange in the human lungs. Simplified models for gas exchange in the human lungs. Costa, Holmes, McCulloch, 2001. Modelling Cardiac Mechanical Properties In Three Dimensions. Large deformation analysis of some soft biological tissues. Gasser, Ogden, Holzapfel, 2006. Fibre Dispersion Law (Version A). Gasser, Ogden, Holzapfel, 2006. Fibre Dispersion Law (Version B). Guccione, Mcculloch, Waldman, 1991. Teaching from classic papers: Hill's model of muscle contraction. Myocardial M...

models.physiomeproject.org

Metabolism — Physiome Model Repository

https://models.physiomeproject.org/metabolism

Acikgoz, Karim, Giri, Schmidt-Heck, Bader, 2009. Two compartment model of diazepam biotransformation in an organotypical culture of primary human hepatocytes. Acikgoz, Karim, Giri, Schmidt-Heck, Bader, 2009. Two compartment model of diazepam biotransformation in an organotypical culture of primary human hepatocytes. Aon, Cortassa, 2002. Coherent and robust modulation of a metabolic network by cytoskeletal organization and dynamics. Bakker, Mensonides, Teusink, van Hoek, Michels, Westerhoff, 2000. A role ...

tracker.physiomeproject.org

Request Queue

https://tracker.physiomeproject.org/request.cgi

Submit question about CellML. Submit question about Zinc. Submit CellML repository issue. When you are logged in, only requests made by you or addressed to you are shown by default. You can change the criteria using the form below. When you are logged out, all pending requests that are not restricted to some group are shown by default. CellML Repository Models / Curation Issues. FieldML specification and API. PMR (Physiome Model Repository) Software. Include in CellML 1.2. CellML Code Generation Service.

models.cellml.org

Physiome Model Repository

http://models.cellml.org/sitemap

An overview of the available content on this site. Keep the pointer still over an item for a few seconds to get its description. Beeler, Reuter, 1977. Reconstruction of the action potential of ventricular myocardial fibres. Schmid, Nash, Young, Hunter, 2006. Myocardial Material Parameter Estimation - A Comparative Study for Simple Shear (Separated Fung Law). Myocardial Material Parameter Estimation - A Comparative Study for Simple Shear (Taylor Series Expansion of the Tangent Law). MRNA expression levels...

cellml.org

Announcing the 9th International CellML Workshop — CellML

https://www.cellml.org/about/news/announcing-the-9th-international-cellml-workshop

Announcing the 9th International CellML Workshop. Announcing the 9th International CellML Workshop. The 9th International CellML Workshop. Will be held 13 and 14 April 2015, on Waiheke Island, Auckland, New Zealand. Further details will be forthcoming early next year. The workshop is being held as a satellite meeting of the 2015 Cardiac Physiome Workshop. A meeting which will showcase some of the technologies and tools covered at the CellML workshop. COMBINE 2016 abstract deadline extended 2016-07-11.

models.cellml.org

Myofilament Mechanics — Physiome Model Repository

http://models.cellml.org/myofilament_mechanics

Adrian, Peachey, 1973. Reconstruction of the action potential of frog sartorius muscle. Campbell, Chandra, 2006. Functions of Stretch Activation in Heart Muscle. Cheng, Brown, Loeb, 2000. Virtual muscle: a computational approach to understanding the effects of muscle properties on motor control. Hai, Murphy, 1988. Cross-bridge phosphorylation and regulation of latch state in smooth muscle. Hunter, McCulloch, ter Keurs, 1998. Modelling the mechanical properties of cardiac muscle. Nash, Panfilov, 2004.

models.cellml.org

Circadian Rhythms — Physiome Model Repository

http://models.cellml.org/circadian_rhythms

Conradie, Bruggeman, Ciliberto, Csikasz-Nagy, Novak, Westerhoff, Snoep,. Restriction point control of the mammalian cell cycle via the cyclin E/Cdk2:p27 complex. Gerard, Goldbeter, 2010. Temporal self-organization of the cyclin/Cdk network driving the mammalian cell cycle. A model for circadian oscillations in the Drosophila period protein (PER). A model for circadian oscillations in the Drosophila period protein (PER). Goldbeter, Pourquie, 2008. Goldbeter, Pourquie, 2008. Leloup, Goldbeter,. Modeling th...

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physiomeproject.org

Physiome Project: Home

The IUPS Physiome Project is a worldwide effort to define the physiome through the development of databases and models which will facilitate the understanding of the integrative function of cells, organs, and organisms.". A brief history of the Physiome Project. From molecules to humankind. The Virtual Physiological Human. Developing a modelling framework. Urinary system and kidney. From molecules to humankind. Developing a modelling framework. The Virtual Physiological Human.

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