vmatch.de
The Vmatch large scale sequence analysis softwareThe Vmatch large scale sequence analysis software is a a versatile software tool for efficiently solving large scale sequence matching tasks.
http://www.vmatch.de/
The Vmatch large scale sequence analysis software is a a versatile software tool for efficiently solving large scale sequence matching tasks.
http://www.vmatch.de/
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The Vmatch large scale sequence analysis software | vmatch.de Reviews
https://vmatch.de
The Vmatch large scale sequence analysis software is a a versatile software tool for efficiently solving large scale sequence matching tasks.
vmatch.de
Free 30-day Vmatch Trial
http://www.vmatch.de/30daytrial.html
For 30 days (free of charge, no strings attached), just send me a mail. Licenses for non-commercial research institutions are available free of charge. To obtain one, please fill out the license agreement. And send it to us by fax or email (as described in the document). Quotes for commercial users are available upon request.
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BacMet FAQS
http://bacmet.biomedicine.gu.se/FAQS.html
By Biocide Resistance Genes. By Metal Resistance Genes. By Genes with Both Biocide and Metal Resistance Potential. Total BacMet Experimentally Confirmed Database. By Biocide Resistance Genes. By Metal Resistance Genes. By Genes with Both Biocide and Metal Resistance Potential. Total BacMet Predicted Database. Whats are the major differences between the two databases listed here? How do you define experimenatlly confirmed genes? What are the sources of BacMet data? How do I install BacMet-Scan? There seem...
Jermdemo: November 2009
http://jermdemo.blogspot.com/2009_11_01_archive.html
Thursday, November 19, 2009. Using Vmatch to combine assemblies. In praise of Vmatch. If I could take only one bioinformatics tool with me to a desert island it would be Vmatch. Originally presented as means to cluster EST sequences, this option is useful for processing the output from de novo short read assemblers like Velvet and ABYSS. Vmatch -dbcluster allows us to easily create a non-redundant set of contig sequences originating from several assemblies. Why would we want to combine assemblies? To the...
TriMetAss - Microbiology, Metagenomics and Bioinformatics
http://microbiology.se/software/trimetass
Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. TriMetAss The Trinity-based Iterative Metagenomics Assembler. Johan Bengtsson-Palme, 2013. If you use TriMetAss in your research, please cite the following paper. In which it is briefly described:. Frontiers in Microbiology, Volume 5, Issue 648 (2014). Doi: 10.3389/fmicb.2014.00648. Please report bugs to my: first name (dot) last name (at) microbiology (dot) se. About 2 years ago.
PETKit - Microbiology, Metagenomics and Bioinformatics
http://microbiology.se/software/petkit
Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. Johan Bengtsson-Palme, 2012-2014. Peacat Paired-end Exactly Alike Consensus Alignment Tool. Metagenomic data with highly identical genes occurring in several different contexts. However, the user should also look into the TriMetAss package. For other alternatives in such applications. Pearf Paired-End-Aware Read Filterer. Reads at once, and then determines if. To map reads to co...
SIMAP
http://liferay.csb.univie.ac.at/portal/web/simap
SIMAP is a database containing the similarity space formed by about all amino-acid sequences from public databases and completely sequenced genomes. You may find sequences and protein entries of interest by fulltext search which uses an index of proteins IDs, accession numbers and descriptions, and the Biothesaurus. Starting from your query sequence you may find the nearest sequences in SIMAP. By searching parts of your query in a suffix array of all SIMAP sequences (generated by VMATCH. Has no liability...
Arabidopsis thaliana Genome DB
http://www.plantgdb.org/AtGDB
That username or email is already registered, or you have forgotten to enter a required field. Please try again. This username is invalid or already in use! This password is invalid! This email address is invalid or already in use! Please supply an account name. Authenticating Login. Please wait. Stay logged in until I:. Am inactive for a day. Forgot username / password. AtGDB - Arabidopsis thaliana. BrGDB - Brassica rapa. CpGDB - Carica papaya. CsGDB - Cucumis sativus. GhGDB - Gossypium hirsutum. The cu...
Lotus japonicus Genome DB
http://www.plantgdb.org/LjGDB
That username or email is already registered, or you have forgotten to enter a required field. Please try again. This username is invalid or already in use! This password is invalid! This email address is invalid or already in use! Please supply an account name. Authenticating Login. Please wait. Stay logged in until I:. Am inactive for a day. Forgot username / password. AtGDB - Arabidopsis thaliana. BrGDB - Brassica rapa. CpGDB - Carica papaya. CsGDB - Cucumis sativus. GhGDB - Gossypium hirsutum. For mo...
Populus trichocarpa Genome DB
http://www.plantgdb.org/PtGDB
That username or email is already registered, or you have forgotten to enter a required field. Please try again. This username is invalid or already in use! This password is invalid! This email address is invalid or already in use! Please supply an account name. Authenticating Login. Please wait. Stay logged in until I:. Am inactive for a day. Forgot username / password. AtGDB - Arabidopsis thaliana. BrGDB - Brassica rapa. CpGDB - Carica papaya. CsGDB - Cucumis sativus. GhGDB - Gossypium hirsutum. Annota...
Config/Create Help
http://goblinx.soic.indiana.edu/XGDB/help/create_gdb.php
Set Up Site Name. Set Up Admin Email. Config: GDB001 PdomGDB r1.2-. Config: GDB002 C.rubella genome annotation-. Config: GDB003 Musa acuminata contig 839-. Config: GDB004 Example 4 - CpGAT Option-. Config: GDB005 Example 3 - Pre-Computed Alignments-. GDB001 PdomGDB r1.2 -. GDB002 C.rubella genome annotation -. GDB003 Musa acuminata contig 839 -. GDB004 Example 4 - CpGAT Option -. GDB005 Example 3 - Pre-Computed Alignments -. All Help Resources -. Your xGDBvm instance is NOT password-protected! Appropriat...
xGDBvm - Licenses
http://goblinx.soic.indiana.edu/project/license.php
GDB001 PdomGDB r1.2 -. GDB002 C.rubella genome annotation -. GDB003 Musa acuminata contig 839 -. GDB004 Example 4 - CpGAT Option -. GDB005 Example 3 - Pre-Computed Alignments -. All Help Resources -. Licenses to software included with xGDBvm. XGDBvm includes software that requires end user licenses. For spliced alignment of proteins to genome. Genefinder used by CpGAT). Used by GenomeThreader, GeneSeqer and CpGAT. Loading Help Page.Thanks for your patience! Loading Video.Thanks for your patience!
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Viebig, McCommon and Associates. Tax return preparation and compliance. Tax planning for individuals, families, and businesses. Estate tax planning and administration. Tax planning for retirement. Support with accountining information systems. We are familiar with matters affecting:. Oil and gas producers. Richard Viebig, CPA. Rick McCommon, CPA. Tim McCommon, CPA. David Farra, CPA. David is a University of Houston graduate who has been with the firm since 1988. He is experienced in a wide range of t...
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The Vmatch large scale sequence analysis software
August 4, 2014. Get a free 30-day trial of Vmatch. This is the web-site for Vmatch. A versatile software tool for efficiently solving large scale sequence matching tasks. Vmatch. Subsumes the software tool REPuter. But is much more general, with a very flexible user interface, and improved space and time requirements. Here. Is a printable version of this HTML-page in PDF. Gives many examples on how to use Vmatch. Here are the program's most important features. Can process sequences over any user defined ...
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