phyloviz.net

PHYLOViZ

Providing scalable data integration and visualization for multiple phylogenetic inference methods. PHYLOViZ is available as a desktop JAVA application. And also as an online application. It allows the analysis of sequence-based typing methods that generate allelic profiles and their associated epidemiological data. All PHYLOViZ code is available in public repositories and under GPL license. Click in development above to explore it. A refinement of eBURST algorithm by Feil et al.

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PHYLOViZ | phyloviz.net Reviews

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Providing scalable data integration and visualization for multiple phylogenetic inference methods. PHYLOViZ is available as a desktop JAVA application. And also as an online application. It allows the analysis of sequence-based typing methods that generate allelic profiles and their associated epidemiological data. All PHYLOViZ code is available in public repositories and under GPL license. Click in development above to explore it. A refinement of eBURST algorithm by Feil et al.

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5 phyloviz online

6 typon

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PHYLOViZ | phyloviz.net Reviews

https://phyloviz.net

Providing scalable data integration and visualization for multiple phylogenetic inference methods. PHYLOViZ is available as a desktop JAVA application. And also as an online application. It allows the analysis of sequence-based typing methods that generate allelic profiles and their associated epidemiological data. All PHYLOViZ code is available in public repositories and under GPL license. Click in development above to explore it. A refinement of eBURST algorithm by Feil et al.

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online.phyloviz.net

PHYLOViZ Online

Web-based tool for visualization, phylogenetic inference, analysis and sharing. PHYLOViZ Online is an online version of the software PHYLOViZ, a software that allows the analysis of sequence-based typing methods that generate allelic profiles and their associated epidemiological data. Our motivation was to give an user-friendly solution for data analysis and sharing without installing any specific software. The application is freely available to all users and there is no login requirement. Web Browsers&#...

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phyloviz.net

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PHYLOViZ

http://www.phyloviz.net/index.html

Phylogenetic inference and data visualization for sequence based typing methods. PHYLOViZ is available as a desktop JAVA application. And also as an online application. It allows the analysis of sequence-based typing methods that generate allelic profiles and their associated epidemiological data. All PHYLOViZ code is available in public repositories and under GPL license. Click in development above to explore it. A refinement of eBURST algorithm by Feil et al. Design: based on Arcana by HTML5 UP.

2

PHYLOViZ

http://www.phyloviz.net/wiki

New code repository for PHYLOViZ: https:/ bitbucket.org/phyloviz. All the PHYLOViZ code is now available for the developer community. Francisco, A.P., C. Vaz, P. T. Monteiro, J. Melo-Cristino, M. Ramirez, and J. A. Carriço. 2012. PHYLOViZ: Phylogenetic inference and data visualization for sequence based typing methods. BMC Bioinformatics, 2012 May 8;13(1):87. For representing the possible evolutionary relationships between strains identified by allelic profiles it uses the goeBURST algorithm. A refinemen...

3

videos

http://www.phyloviz.net/wiki/videos

Full Screen 1080p version. Best watched at full screen. Last edited Fri Dec 23 10:20:36 2011.

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PHYLOViZ

http://www.phyloviz.net/publications.html

Our papers and reports on PHYLOViZ and related projects. PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees. By B Ribeiro-Gonçalves, A. P. Francisco, C. Vaz, M. Ramirez and J. A. Carriço. PHYLOViZ Online: Web-based phylogenetic data analysis and visualization for allelic profiles and SNP data. Not seeing the forest for the trees: Size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis.

5

sampledatasets

http://www.phyloviz.net/wiki/sampledatasets

Here you can find sample files correctly formatted to use with PHYLOViZ software. You can download the files by right clicking on the link and selecting the "Save link as" option. MLST - MultiLocus Sequence Typing. Data from Streptococcus dysgalactiae subspecies equisimilis. From the publication :. PLoS ONE 5(7): e11741. doi:10.1371/journal.pone.0011741. The MLST Allelic profile can contain any number of loci. MLVA - MultiLocus Variable Number of Tandem Repeats Analysis. Data from Brucella spp. The SNP d...

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pedromonteiro.org

Pedro T. Monteiro

http://www.pedromonteiro.org/index.html

Pedro T. Monteiro. With a FCT Investigator grant. Rua Alves Redol 9. P-1000-029 Lisboa, Portugal. 351) 21 3100 320. I belong to http:/ CoLoMoTo.org. Consortium for Logical Models and Tools), a consortium of research groups interested in logical modelling. The consortium works on the definition of standards for model representation and interchange (especially the SBML qual format), and on the comparison of methods, models and tools. In this context, I am currently involved on the development of:. Database...

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Providing scalable data integration and visualization for multiple phylogenetic inference methods. PHYLOViZ is available as a desktop JAVA application. And also as an online application. It allows the analysis of sequence-based typing methods that generate allelic profiles and their associated epidemiological data. All PHYLOViZ code is available in public repositories and under GPL license. Click in development above to explore it. A refinement of eBURST algorithm by Feil et al.

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