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Mac OSX software for sequence analysis. Note: The NCBI client provided by versions of XplorSeq earlier than 1.0.7 is deprecated. Please download a new release of XplorSeq. Toolkit of sequence analysis software. Includes C and C libraries and source code for the following programs: barcrawl, bartab, biodiv, sortx.

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Mac OSX software for sequence analysis. Note: The NCBI client provided by versions of XplorSeq earlier than 1.0.7 is deprecated. Please download a new release of XplorSeq. Toolkit of sequence analysis software. Includes C and C libraries and source code for the following programs: barcrawl, bartab, biodiv, sortx.
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Mac OSX software for sequence analysis. Note: The NCBI client provided by versions of XplorSeq earlier than 1.0.7 is deprecated. Please download a new release of XplorSeq. Toolkit of sequence analysis software. Includes C and C libraries and source code for the following programs: barcrawl, bartab, biodiv, sortx.

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phyloware.com phyloware.com
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Scripts

http://www.phyloware.com/Phyloware/Scripts.html

These python scripts simplify input and output from sortx and biodiv. Tested on Mac OSX and a variety of Linux systems. Click on script name to download. Compiles sortx output (.grp files) into single tab-delimited-file. Prepares .exp and .grp files for biodiv. Prepares .exp and .grp files for biodiv. Deletes sequences not found in both files. Charles E. Robertson, Ph.D.

2

XSTK

http://www.phyloware.com/Phyloware/XSTK.html

XSTK is a suite of C and C libraries and command-line programs for DNA sequence analysis. Tested on Mac OSX and a variety of Linux systems. Includes source code for the following programs:. Design barcoded oligonucleotides for multiplex sequencing. Annotate, bin and dereplicate barcoded DNA sequences. Calculation of common ecological biodiversity indices. Extract rRNA sequences from GenBank file. OTU clustering of aligned sequences. Merge sequences in two fasta/q files. Post-process cross match output.

3

XplorSeq

http://www.phyloware.com/Phyloware/XplorSeq.html

Mac OSX software for sequence analysis. This software facilitates the management of nucleic acid sequences for phylogenetic analysis. Runs on Macintosh OSX systems. Freely available for non-commercial use (see manual for license agreement). For OS 10.4.x or 10.5.x:. Xplorseq1.0.7.tar.gz. OS105x or OS10.6.x:. Xplorseq2.0.7.tar.gz. Frank DN (2008) XplorSeq: a software environment for integrated management and phylogenetic analysis of metagenomic sequence data. BMC Bioinformatics 9: 420.

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MCDB Department Home Page. A comprehensive list of 3,500 free online journals. RNase P Data base. The Nucleic Acid Database. Image library of Macromolecules. Home of Xplorseq, Biodiv, Barcrawl, Bartab, and Sortx). Used to check for chimeric sequences). The Tree of Life. The Phylogeny of Life. The world wide club for the biological and medical community). Institute for Scientific Information. Forget the teddy bear, these stuffed toys are the best. In the Gold Biosciences Building.

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Mac OSX software for sequence analysis. Note: The NCBI client provided by versions of XplorSeq earlier than 1.0.7 is deprecated. Please download a new release of XplorSeq. Toolkit of sequence analysis software. Includes C and C libraries and source code for the following programs: barcrawl, bartab, biodiv, sortx.

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